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  • Review
    li yuan dong,JIANG Hai-xia and XIE Li-qiong
    Journal of Plant Genetic Resources. 2022, 23(6): 1585-1593. https://doi.org/10.13430/j.cnki.jpgr.20220518003
    Salt stress is one of the most important abiotic stresses, which seriously threatens the growth and development of plants. Understanding the adaptive mechanisms of plant to salt stress is beneficial for the breeding of salt tolerant crops and the effective use of saline land to meet the increasing demand of food supply. Salt stress causes ion imbalance, osmotic derangement, and accumulation of toxic substances, especially reactive oxygen species (ROS), in plants. To adapt to salt stress, the plants have to balance cellular ions, remodel osmotic potential and maintain ROS. The former researches on the genetic, physiological and biochemical subjects have revealed a large number of plant regulators responding salt stresses, which might modulate plant salt tolerance through multiple and complex stress signal pathways. This paper reviews the salt sensing, signal transduction, gene expression regulation, phytohormone regulation and adaptive response of plants under salt stress, and provides a relatively complete summary of plant salt stress response mechanisms.
  • Review
    CHEN Nai-yu,ZHANG Guo-xiang,ZHANG Li-shuang,AN Yi-min,DU Jia-huan,WANG Dan and GUO Chang-hong
    Abiotic stress seriously affects plants growth and crop yield. Plant AREB (ABA responsive element binding protein)/ABF(ABRE binding factors) transcription factors are a type of leucine zipper protein that specifically recognizes ABA-responsive element (ABRE). They are involved in regulating the expression of ABA-responsive genes and play a crucial role in the response to abiotic stress in plant.This article introduced the structural characteristics of ABF transcription factors, the identified cis-acting elements, regulatory modification pathway and their roles in response to abiotic stress. This review might contributes a theoretical foundation for the application of ABF transcription factors to breed excellent cultivars?with stress tolerances.
  • Review
    LAN Mengjiao,KOU Meng,XIAO Manqiu,LI Chen,PAN Hao,ZHANG Yungang,LU Lingzhi,HOU Longying,GE Ruihua,WU Wensheng,LI Qiang
    AP2/ERF(APETALA2/ethylene responsive factor) is one of the largest transcription factor (TF) families in plants, which contains at least one specific AP2 domains composed of 60-70 highly conserved amino acids. Depending on the number and sequence similarity of AP2 domains, this family can be classified into five subfamilies: AP2 (APETALA2), DREB (dehydration-responsive element binding proteins), ERF (ethylene-responsive factor), RAV (related to AB13/VP), and Soloist. AP2/ERF TFs regulate their expression by binding to target genes through YRG and RAYD conserved elements in the AP2 domain. At present,AP2/ERF TFs have become a hot candidate gene for studying plant stress resistance mechanisms and biosynthesis of active ingredients. More and more AP2/ERF families and their members have been reported. In this review, we summarized the latest research achievements on plant AP2/ERF family, including the structural characteristics and classification, and the research progress of AP2/ERF TFs involved in regulation of plant secondary metabolites synthesis, participation in biological and abiotic stress response was mainly introduced.Meanwhile, possible hot research topics and fields of AP2/ERF were proposed,which may provide a reference for further mining and utilization of such transcription factor genes for plant genetic improvement and germplasm innovation.
  • GENE MINING
    Liu Huiyun, Liu Chang, Wang Kunyang, Du Lipu, Wang Ke, She Maoyun and Ye Xingguo
    High molecular weight glutenin subunits (HMW-GS) are the most important components in the storage protein of wheat grains. Their compositions, expressions and contents determine the dough elasticity and baking quality. This article summarized the progress of cloning, molecular characterization and functional studies of HMW-GS as well as their marker development and application in wheat breeding. Update status of different HMW-GS effects on flour processing quality, genetic transformation of several HMW-GS genes, small-scale mixograph analysis by adding prokaryotic expressed HMW-GS, and mutant developing on HMW-GS loci, were also reviewed. Besides, crucial issues in current studies on wheat HMW-GS were discussed. It is suggested that the key point on HMW-GS in the future will be to pyramid some desirable HMW-GS genes by marker assisted selection and transgenic strategies for the development of wheat varieties with good bread-making quality and the functional dissection of each HMW-GS gene accurately.
  • Review
    LI Jian-feng,LI Ting and JIA Xiao-ping
    The PRRs family gene, which serves as a major component of the core clock of the circadian clock, plays important role in inhibiting the plant flowering, and manipulating ABA-dependent stress resistance and the accumulation of plant biomass. This article reviews the structural characteristics of the PRRs family genes, the photoperiod regulation model and its responses under stress treatments, in order to provide a theoretical reference for further study of the function of PRRs family genes and the cultivation of high-quality and broad-suit crop varieties.
  • Review
    LYU Guang-de,JIN Xue-mei,GUO Ying,ZHAO Yan,QIAN Zhao-guo,WU Ke and LI Si-shen
    Plant height is one of the important agronomic traits and controlled by a consequence interacting among the genetic factors, the endogenous hormones and external environment. In common wheat, plant height is recognized as a quantitative trait modulated by multiple genes that are found on 21 chromosomes. Several molecular markers associating with plant height are available for marker-assisted breeding. The important progress on determining the genetic factors, genetic localization and gene isolation, regulation mechanism and marker assisted selection have been achieved. This paper summarizes the factors that contribute to wheat plant height, as well as the achievements on genetic localization, gene cloning, allelic mining, marker-assisted wheat breeding, followed by the prospective on future focuses in wheat.
  • Short Communications
    ZHANG Lei-lei,FAN A-qi,HONG Mei,MA Zhi-hua,CHEN Jin-rui,ZHAO Shuang-yin,ZHENG Kai,Tu'er-xun Tu'er-hong
    Journal of Plant Genetic Resources. 2023, 24(1): 307-316. https://doi.org/10.13430/j.cnki.jpgr.20220815003
    The variation coefficient analysis, genetic diversity analysis, correlation analysis, principal component analysis and cluster analysis of 647 island cotton germplasm resources were carried out in order to screen more diverse types of island cotton germplasm resources for parent selection and variety breeding in the future. The variation range of quantitative index of 647 sea island cotton germplasm resources was 2.4608%~36.4320%, indicating the rich diversity among sea island cotton germplasm resources. The number of stem hairs, leaf color, leaf hairs, petal basal spot size, main stem hardness, fruit branch type and style length of island cotton germplasm resources were variable, and these external descriptive traits could be directly used for the improvement of plant morphology. Genetic diversity analysis of quantitative indicators showed that the diversity of indicators reflecting fiber quality was more abundant than that reflecting yield, and germplasm resources could be used for improving fiber quality and maturity. Correlation analysis revealed a significant correlation between different quantitative traits. Among them, the first fruit branch node was significantly negatively correlated with the average length of the upper half, the uniformity index and the breaking strength, the sub-index was significantly negatively correlated with the micronaire value, and the lint percentage was significantly negatively correlated with the average length of the upper half. The above correlation is consistent with previous research results on upland cotton, The complicated interaction mode implied a comprehensive evaluation by integrating multiple datasets in germplasm innovation. The principal component analysis showed that the cumulative contribution rate of the first five eigenvalues reached 75.761%. The first principal component was related to fiber quality, the second principal component was related to seed cotton yield, the third principal component was related to elongation, the fourth principal component was related to maturity, and the fifth principal component was related to lint percentage. When the genetic distance was 10, the germplasm resources were divided into 6 groups by cluster analysis. The comprehensive performance of cluster II was better. In actual breeding, targeted selection and improvement can be carried out according to breeding objectives.
  • Research Articles
    YUAN Kai,ZHANG Wei,WEN Hong-wei,ZHANG Ting,YANG Bin,SHI Xiao-fang,JI Hu-tai,ZHANG Ming-yi and LU La-hu
    In order to enrich the genetic diversity of common wheat, an EMS (Ethyl Methane Sulfonate)-induced mutagenesis population using the elite variety Jimai 22 was produced and the phenotypic variation in M2 generation plants was analyzed. The seed quality-related traits in M8 mutants showing excellent agronomical performance were further investigated. The results showed that: (1) out of 22599 M2 mutant plants, 5002 showed visible phenotypic variations with a rate of 22.13%. The phenotypic variations on fertility, growth period, ear, awn, leaf, plant type, tiller, plant height, grain color were observed. These mutants with bigger spike, multiple tillers, short stem, single stem, increased grains, no wax, leaf degradation and sterility were detected. (2) In M8 mutagenized lines, the morphological variations on grain shape, grain length, fullness and grain color were found. The variation coefficient regarding to eight quality-related traits was calculated (maximum tensile resistance > tensile area > stability time > sedimentation value > hardness >protein content > wet gluten content > water absorption). Eight mutant lines showing improved performance (in relative to Jimai 22) had been identified. For example, four lines including 403-1, 403-2, 403-3 and 85-2 showed significant improvement on at least 3 characters. Collectively, these mutants provided germplasm resource valuable for wheat breeding and deciphering the gene function.
  • Review
    OUYANG Suying,WANG Zhiquan,LI Qing,XU Qing,HE Huan,ZHANG Hongguan,ZOU Xuexiao,HU Bowen
    Chili(Capsicum annuum L.)crops have high economic value and extensive planting, and most of the chili cultivars in China have high plant type, many branches, easy lodging, not conducive to mechanized production, and the cost of artificial production is rising. With the improvement of agricultural production technology and the increasing shortage of labor, the transformation of traditional agriculture to modern mechanized agriculture is imminent. The proposal of ideal plant type makes plant type regulation a hot spot in genetic breeding, which can provide reference for the analysis of the regulation mechanism of chili plant type. This paper reviews the research results of recent domestic and foreign scholars on the genetic factors and molecular mechanisms of plant type regulation, the biological relationship between plant hormones and plant type, and the influence of the environment on plant type, and puts forward the idea of ideal plant type of chili. Good chili plant type can improve plant production capacity, facilitate management, alleviate labor shortage, and accelerate the process of mechanized production. At present, there are few research reports on the regulation mechanism of chili plant type, so exploring the breeding mechanism and genetic basis of plant type regulation is conducive to providing theoretical support for the creation of good plant type germplasm resources and accelerating the selection and breeding of new varieties, and laying the foundation for the genetic breeding .
  • GERMPLASM RESOURCES
    LIU Xu,LI Yu,LI Li-hui,JIA Ji-zeng
    Journal of Plant Genetic Resources. 2023, 24(1): 1-10. https://doi.org/10.13430/j.cnki.jpgr.20221127001
    Crop germplasm are basic resources for global food security and sustainable development and material base for original innovation of agricultural science and technology and development of modern seed industry. The science of crop germplasm resources is a scientific discipline devoting to the research on diversity and its use of crops and their wild relatives. The three basic theories of the science include the theory of centers of origin of cultivated plants, the law of homologous series in variation and the synergistic evolution theory of crop germplasm resources and cultural environments and social development. The basic attributes of the science include genetic diversity, genetic specificity, genetic integrity and genetic accumulativeness. The science covers theories, technologies, management and systems involving in survey, conservation, evaluation, research, germplasm enhancement and sharing service of crop germplasm resources. This paper establishes the theoretical framework of the science of crop germplasm resources, defines basic concepts and attributes related, and proposes development strategies of the science, esp. in China.
  • Review
    Zhang Ju,,,,,, and
    Journal of Plant Genetic Resources. 2022, 23(6): 1604-1612. https://doi.org/10.13430/j.cnki.jpgr.20220426003
    The establishment of Adaxial-Abaxial polarity of plant leaves is one of the important processes in leaf morphogenesis. ASYMMETRIC LEAVES1/ASYMMETRIC LEAVES2 (AS1/AS2) are key transcription factors that modulate the Adaxial-Abaxial polarity in plant leaf development. These factors are able to cooperate with multiple proteins or miRNAs in the direct or indirect manners, in order to coordinate the development and formation of plant leaves. This review summarized the conserved structural features of AS1/AS2 and their regulatory functions involved in leaf development and morphogenesis, which might provide insights for further deciphering the molecular mechanisms of AS1/AS2.
  • Research Articles
    WANG Chu,YIN Yan,WANG Hao,LI Shi-hui,ZHAO Chun-hua,QIN Ran,SUN Han,WU Yong-zhen,MU Yan-jun,KONG Jun-jie,XU Ling,HUANG Xiao-mei,XIN Qing-guo,WANG Jiang-chun,CUI Fa
    Wheat variety Yannong 999 (YN999) shows stably high yield potential with strong environment adaptability. Unlocking its genetic basis and key chromosomal regions underlying high yield performance will provide theoretical support for the further application. In this study, a 55K wheat SNP array was used for genotyping the YN999, its 46 derived varieties (lines) and a natural mapping population containing 243 wheat varieties (lines). The genetic effects of the key chromosomal segments undergone strong selection was elucidated. The genetic cause of high-yielding potential in YN999 was dissected based on the composition of excellent alleles underlying the three yield components. The characteristics of high thousand kernel weight were preferentially selected and present in the derived varieties (lines). Genotyping using the wheat 55K SNP array revealed that the average genetic similarity coefficient of YN999 if compared to 46 derived varieties (lines) was 0.87. The genetic contribution of YN999 to its derived varieties (lines) of F3, F5, F6 and F7 were 84.94%, 86.19%, 86.67% and 87.65%, respectively. A total of 222 segments of YN999 with over 95% transmission rate were detected in the offspring of YN999, and the length of the segment varied from 5.04 Mb to 108.75 Mb, among which 2A contained the longest segment with high frequency selection, being 483.37 Mb, and 7D contained the shortest of 13.84 Mb. A total of 135 identified QTL related to yield traits were coincided with the 222 high-frequency selection regions, with 80, 48 and 7 QTL in the A, B and D genome, respectively. A total of 1195, 267, 790 and 678 significant SNPs, which were correlated with yield per plant, kernel number per spike, 1000-grain weight and spike number per plant, respectively, were detected by single marker QTL analysis using a natural mapping population. Among those, approximately 84.02%, 51.69%, 94.18% and 13.42% alleles contributing to the higher yield performance were identified from YN999. These results indicate that YN999 has enriched the superior alleles of yield per plant and 1000-grain weight, which might be the important genetic basis for the high and stable yield in YN999. This study provided theoretical reference in application of YN999 as key parent in molecular breeding programs, and identification and cloning of the genes with high yield performance.
  • Research Articles
    LIU Jinyang,ZHOU Yanyan,LIN Yun,LIU Mengmeng,XUE Chenchen,CHEN Jingbin,YAN Qiang,WU Ranran,CHEN Xin,YUAN Xingxing
    Faba bean (Vicia faba L.) is an important legume crop in China. Southern China is the autumn planting area of faba bean, where mainly produces large-grained fresh faba bean. The correlation analysis of the seed size-related traits of the faba bean resources from this area was carried out to explore the associated molecular markers applicable for molecular marker-assisted breeding. In this study, phenotype of seed size-related traits in 90 faba bean resources were collected in 2019 and 2020. Sixty-seven pairs of polymorphic SSR markers were used for genotyping, producing a total of 278 alleles with the average alleles of 4.1. The resources were divided into 3 groups by cluster analysis, in which accessions with higher values of seed length, seed width and 100-seed weight are mainly found in the A group. In addition to the population structure analysis, the MLM models (Q+K) of TASSEL software were used to conduct associate studies of seed size-related traits and 67 SSR markers. A total of 50 significantly associated markers (P<0.001) were detected by mixed linear model (MLM) of TASSEL, of which 29 markers had a P-value less than 0.0001. In multiple environments analysis, ICS48 and ICS455 were significantly associated with both grain width and grain weight. According to the association stability and contribution rate, three dominant alleles (ICS48-H1, ICS51-H1 and ICS455-H3) related to seed size were obtained (P<0.0001; r2>18%). This study will contribute to the molecular marker-assisted selection and molecular design breeding of faba bean in autumn planting areas in China.
  • GENE MINING
    liuxin,,张学文 and 张增艳
    A plant protoplast system can be used to study transient gene expression, protein subcellular localization, protein-protein interaction and protein activity as well as gene function. The application of heterologous protoplast systems to the expressed proteins may exhibit aberrant trait. To avoid this mistaking, it is necessary to establish and apply the host protoplast systems. In wheat, the PEG-mediated gene protoplast transformation is hampered by the release of nucleases from the protoplasts, which leads to extensive degradation of plasmid DNAs. In this study, in order to get the high efficiency of the wheat protoplast transformation, means including inhibiting the nucleases activity and enlarging the plasmid quantity were used. The results showed that the protoplast transformation efficiency could be improved through double-fold usage of the plasmid quantity and inhibiting the nucleases activity by low transformation temperate. Consequently, the wheat protoplast transformation efficiency was raised to 85 %. Moreover, this wheat protoplast transformation system was used to study the expression protein subcellular localization of 2 wheat disease-related genes. This research has reference value for the future relevant work
  • Review
    LIU Ju,ZHANG Hui-ling,ZHANG Zhong-hua,ZHAO Ya-nan,ZHANG Ju-ping
    Anthocyanins, which are natural pigments and serve as important natural antioxidants scavenging free radicals, are rich in a variety of compounds that are important in health care. Anthocyanins affect the ripening, taste and color of fruits and vegetables, and prevent plants from abiotic and biotic stresses. Therefore, optimizing anthocyanin content is regarded as the breeding goal in many horticultural crops. As the secondary ethylene signaling transcription factors, ethylene response factors (ERFs) respond to plant hormone signaling and can result in feedback regulation, and these genes are known to modulate the process of ethylene regulating anthocyanin biosynthesis via various mechanisms. In terms of the molecular mode, ERFs in regulation of anthocyanin biosynthesis rely on the physical interaction with transcription factors, activating transcription factors, forming regulatory complexes with MBW or directly activating structural gene promoters. This study aims to provide a theoretical basis for further elucidating the mechanism of ERF regulating anthocyanin biosynthesis, and to explore the relationship between the rapid accumulation of anthocyanins and the increase of ethylene release in fruits and vegetables at the late ripening stage.
  • GENE MINING
    feng zhijuan,xu shengchun,liu na,zhang guwen,hu qizan and gong yaming
    TCP transcription factors (TFs) constitute a family of plant-specific proteins, with conserved motif known as the TCP domain. TCP domain contained 60 amino acids, and formed a bHLH structure involved in DNA-binding and protein-protein interaction. TCP TFs have been found to regulate many aspects of plant development, such as branching, height, leaf and flower growth. However, the study of TCP TFs in response to abiotic stress started relatively late. Accumulating evidence suggested that these proteins also played crucial roles in environmental stress responses, such as those mounted to cold and salt stresses. TCP TFs were involved in brassinolide, jasmonic acid, gibberellin and cytokinin signal transduction pathways. Thus, TCP proteins might be involved in the cross-talking between plant development and stress signal pathway. This paper systematically reviewed the latest advances on the functions and mechanisms of TCP TFs in plant developmental programs, hormonal interactions and environmental stresses, which may shed new lights on the applications of these proteins in modifying plant growth and resistance in desirable ways.
  • Review
    YANG Dewei,ZHANG Haifeng,YU Wenquan
    Agricultural germplasm resources mainly include crops, livestock and poultry, agricultural microorganisms and medicinal plants. There are 134,000 crop germplasm resources preserved in China, among which 74,000 are rice germplasm resources. How to accurately evaluate and utilize such huge rice germplasm resources is of great significance in rice germplasm innovation and breeding. In this paper, we reviewed the progress in collection, evaluation and accurate identification of rice germplasm resources, creation of new strains of rice, utilization of heterosis of rice, new techniques and methods of rice germplasm creation, and exploration and utilization of excellent genetic resources of rice, and summarized a new model of rice germplasm resource creation and utilization. Finally, this article discussed the current problems of rice core germplasm construction, germplasm resources identification and mining, and germplasm resources sharing and win-win mechanism. At the same time, we analyzed and prospeced how to strengthen the construction of specialized core seed resources, the accurate identification of germplasm resources, the innovative research of germplasm resources, the sharing mechanism of germplasm resources and the cooperation and exchange of germplasm resources, in order to provide some reference and help for further development of the identification, evaluation and innovative utilization of rice germplasm resources.
  • Review
    QIU Lin,ZHAO Lin-shu,XIE Yong-dun,XIONG Hong-chun,GU Jia-yu,BI Xiu-li,LIU Lu-xiang and GUO Hui-jun
    Journal of Plant Genetic Resources. 2022, 23(2): 346-357. https://doi.org/10.13430/j.cnki.jpgr.20210930001
    Senescence,as the final stage of natural development of plants,has an important influence on crop yield. In order to promoting the selection and breeding of new crop varieties and yield improvement, it is important to deeply analyze the regulatory mechanism and influencing factors of premature senescence. Except the stress of natural environment,genetic network of crops is an important factor in regulating plant premature senescence. A variety of metabolic pathways in plants affect the period of senescence onset. Here we reviewed the various physiological,biochemical and yield changes during premature senescence in plants. Premature senescence caused degradation of chlorophyll and other macromolecules,significantly reducd leaf photosynthetic and transportion of nutrients from senescent tissues to young tissues and reproductive organs. The process was accompanied by the accumulation of reactive oxygen species (ROS),decreased the activity of antioxidant enzymes in the cells and upregulated of senescence-associated gene (SAG) expression,which eventually led to premature senescence and reduced plant yield. Premature senescence is a complex and sequential process regulated by multiple genes. We summarized the gene networks regulating premature senescence among different species,and introduced the mechanisms of premature senescence regulation through transcription factor regulation,hormone and protein metabolism. It provides suggestions on the research of premature senescence mechanism and breeding utilization in the future.
  • Research Articles
    AN Chen,SHAO Ye,PENG Yan,MAO Bigang,ZHAO Bingran
    To characterize the resistance of the novel rice mutant ALS179 to acetolactate synthase (ALS) inhibiting herbicides, this study analyzed the Ethyl Methyl Sulfone (EMS)-mutagenized novel rice mutant ALS179, together with wild-type Huahang31 (HH31), imidazolinone-tolerant rice ALS627 mutant, treated by four types of ALS-inhibiting herbicides by either seed coating or seedling spray treatment at different concentrations. The phenotypes and enzyme activity indexes were further determined to investigate the resistance of the mutant ALS179. The results showed that the mutant ALS179 showed various degrees of resistance to benensulfuron, imazethapyr, bispyribac-sodium and pyroxsulam after herbicide coating for seed soaking and seedling spraying, and the activities of acetolactate synthase, peroxidase, catalase and superoxide dismutase tended to decrease with increasing herbicide concentration. The enzyme activities of acetolactate synthase, superoxide dismutase, catalase, and peroxidase were higher in ALS179 than in wild-type HH31 under all treatment conditions, except for imidazoleisonicotinic acid treatment condition at high concentration where the enzyme activities of catalase and peroxidase were lower than those of wild-type HH31.Collectively, we found that the Ala179Val mutation conferred broad-spectrum resistance to ALS-inhibiting herbicides and provided genetic germplasm resources for the subsequent breeding of ALS-inhibiting herbicide broad-spectrum resistant rice lines.
  • Review
    DU Chaojin, ZHANG Hanyao, LUO Xinping, SONG Yunlian, BI Jue, WANG Yuequan, ZHANG Huiyun
    Journal of Plant Genetic Resources. 2024, 25(2): 151-161. https://doi.org/10.13430/j.cnki.jpgr.20230811001
    As the reproductive organ of angiosperms, the flowers are a vital part of plants and a prime basis for the study of plant evolution andclassification. The development of the floral organ is affected by a variety of factors, such as the external environment and internal physiology, leading to different traits in different species or among the same species, and genes, as the key factors therein, play a vital role in the whole process, and the role of their genes in the regulation of floral development has been a hot topic of research. The five whorls of structures of the calyx, corolla, stamen, pistil, and ovule of the floral organ are regulated by five categories of genes, A, B, C, D, and E, in the AE model of floral development, and these genes form a complex gene regulatory network in the process of floral organ development. The expression or silencing of each category of genes leads to structural changes in the floral organs, but there are differences among different species. In this paper, we reviewed the regulatory roles of MADS-box, AP2/ERF gene family members AP1, AP2, AP3, PI, AG, SEP, AGL6, SHP, STK, and other genes such as NAP, SPL, TGA, PAN, and WOX in the construction of floral organs, and the effects of genes in the development of floral organs at the molecular level were analyzed. The influence of genes on floral organ development at the molecular level was also analyzed. This study provides a reference for further understanding the role of genes in the regulation of floral organ development in various plants.
  • Review
    YU Mei,TANG Hua-li,YE Xing-guo
    Journal of Plant Genetic Resources. 2023, 24(1): 102-116. https://doi.org/10.13430/j.cnki.jpgr.20220809001
    Wheat grain, with rich nutrition and various end-uses in markets, provides diets in over one-third of the global human population. However, with the increasing influence of biological and abiotic stresses, such as threats of diseases and pests, environmental damages of drought, high temperature and salinization, the sustainability of global wheat production is under increasing threats. In order to ensure the global food security supply and demands for high quality products, the desirable increases on wheat production and quality require to the constantly developing of new breeding methods and germplasm resources used for wheat breeding. In the past decade, significant progress on plant biotechnologies such as transgenic study and genome editing has been achieved, and gradually applied in wheat genetic improvement. To date, the efficient systems for wheat genetic transformation and genome editing have been established, in which the transformation efficiency for the model genotypes mediated by Agrobacterium is higher than 50% and the editing efficiencies of some target genes via CRISPR/Cas9 reach to 40%-70%. The genotype independency in wheat transformation and genome editing has been overcome almost. Some of wheat traits including disease resistance, stress tolerance, quality feature, yield potential, and growth and development regulation have been modified by using transgenic and gene editing methodologies; many new wheat genetic stocks showing disease resistances to powdery mildew, rusts, scab and yellow mosaic virus, tolerances to pre-harvest sprouting, drought and salt, low gliadin content, high gluten content, male sterility and haploid induction ability were created by the requirement of wheat improvement. This review aims to summarize the latest research progresses on transgene and genome editing in wheat, and to explore the current problems and possible solutions.
  • GENE MINING
    Qi Yan and
    Heat shock protein 90 (HSP90) widely mediated stress signal transduction, and plays an important role in the control of normal growth of human cells and in the promoting tumor cell development. At present, HSP90 has become forefront projects of cellular immunity, signal transduction and anti-cancer investigation. The physiological function of HSP90 start later in plant than in animal and fungi. Recent researches revealed that plant HSP90 plays an important role in development, environmental stress response and disease resistance. This paper discussed the molecular functions of HSP90, and systematically reviews latest progresses on molecular mechanism of plant HSP90 as well as improvement of plant resistance to facalitate broaden work.
  • GENETIC RESOURCES
    Chen Xiaoling,,, and
    The current article is a synthesis of progress in cryopreservation state and research of plant germplasm resources in the world, based on the Second Report of the State of the World’s Plant Genetic Resources for Food and Agriculture, International Conferences and other literatures. The contents covered material types, basic procedures, methods and techniques, theoretical basis, influence factors, costs, strategy and practical application in the cryopreservation of plant germplasm resources. It also identified the gaps and put forward striving direction and the suggestions for strengthening the safety and long-term cryopreservation of non-orthodox seed plant germplasm resources in China.
  • Research Articles
    GUO Dong,DU Mei,ZHOU Bao-yuan,LIU Ying-hui and ZHAO Ming
    In order to study the small auxin-up RNA (SAUR) family of maize, this study identified by the genome-wide prediction approach 91 SAUR genes which named ZmSAURs, and analyzed the gene structure, amino acid characteristics, chromosomal location and genetic evolutionof ZmSAURs. The results showed that, the SAUR gene family were unevenly distributed on the chromosome, while the chromosome 2 up to 22 ZmSAURs. The amplification pattern of the gene was dispersed replication and fragment replication. The SAUR gene family has a relatively conserved structure, e.g. a conserved RNA DNA structure and the 3D structure of the deduced proteins that generally contained three alpha helices and three beta sheets. The phylogenetic tree analysis revealed 9 branches of SAUR proteins among species. As expected, SAURs in corn and relative millet (Setaria italic) were clustered together. Thus, this information provided by this work might be useful in future functional characterization of the maize SAUR gene family.
  • Research Articles
    LI Zhen-zhu,PENG Qing-xiang,QIU Xian-jin,XU Jun-ying,LI Zhi-xin,LIU Hai-yang
    The tiller angle is one of the most important traits in the plant architecture of rice, which significantly determines the rice yield. At present, the major tiller angle genes in rice are TAC1Tiller Angle Control 1) and TIG1Tiller Inclided Growth 1). It is necessary to further explore new loci and molecular markers to promote ideal plant architecture breeding in rice. In this study, a BC3F2 population was developed using large-angled wild rice as the donor and small-angled cultivar Zhenshan 97 as the recipient, and tiller angle separation was observed in the 54th line. QTL mapping of tiller angel was performed using QTL-seq, and a QTL was detected on chromosome 8. TIG1 was identified as the candidate gene through sequence comparison of known genes within the interval. A KASP functional molecular marker was designed based on the causal variation of C?T at -449 bp in the promoter of TIG1. The marker was verified in the mapping population and varieties, and it was confirmed that the KASP marker can accurately identify the genotype of the TIG1 locus. In Geng/JaponicaTIG1 with large angle is dominant, while 61.40% and 38.40% of Xian/Indica varieties carry tig1 with small angle and TIG1 with large angle, respectively. This marker has significant potential utilization value for improvement of rice plant architecture. The development of this KASP marker provides a new tool for molecular marker-assisted improvement of rice tiller angle and is expected to speed up the breeding process for the ideal rice plant architecture.
  • Review
    WANG Dong-lei,WANG Zhi-quan,LI Qing,OU YANG Su-yin,YANG Bo-zhi,ZHANG Zhi-shuo,LIU Feng,HU Bo-wen and ZOU Xue-xiao
    Dwarfing is an important agronomic trait in crops, which can reduce lodging, enhance stress resistance and increase yield. Brassinosteroid is an important new plant hormone that regulates plant height during plant growth and development. Mutations that cause a decrease in Brassinosteroid level or impair Brassinosteroid signaling will produce a dwarf phenotype. This article focuses on the mutated genes that induce the dwarf phenotype in each pathway. The discovery of these genes has expanded the germplasm and genetic basis of dwarf crop breeding, and provides a theoretical basis for the creation of dwarf germplasm resources and rapid breeding of new dwarf varieties.
  • Research Articles
    HE Mi-lan,LI Hai-yang,HUANG Ze-rong,KONG Fan-jiang and ZHAO Xiao-hui
    Journal of Plant Genetic Resources. 2022, 23(3): 787-799. https://doi.org/10.13430/j.cnki.jpgr.20211218001
    DELLA proteins are known as negative regulators of gibberellin involved in plant flowering. Eight DELLA genes were identified in soybean genome by sequence alignment with Arabidopsis thaliana(L.) Heynh. DELLA orthologs GmGAI3a has only one GRAS domain,and the other seven DELLA proteins have both DELLA domain and GRAS domain. By performing gene-based association analysis of flowering time in natural population,soybean DELLA haplotypes associating with early-flowering have been detected in soybean accessions collected from the middle and high latitude of China,speculating DELLA genes as negative factors in regulating flowering. CRISPR/Cas9-based editing in soybean hairy root system revealed the editing efficiency at the target sites. Identification of the CRISPR/Cas9 targets of seven DELLA genes provided references for generating stable transgenic DELLA mutants for deciphering their biological functions.
  • Research Articles
    HUANG Wan-ting,WANG Qian,ZHANG Ze-yan,ZHU Hui-jun,YAN Hu-bin,ZHANG Yao-wen
    Seed coat color is an important agronomic trait that associates with crop domestication and serves as morphological marker. In mung bean, the seed coat color was related to the content of flavonoids. Cloning and application of seed coat color-related genes becomes of interest in development of new mung bean varieties with improved nutritional properties. In this study, the varieties 'Jilv 9' (black seed coat) and 'Ziyuan 330' (yellow seed coat) were used as parents to generate an F2 segregating population. The BSA-seq approach was applied for mapping of the genes underlying the seed coat color. The association analysis using integrated SNPs and InDels suggested an interval of 3.26 Mb harboring 324 predicted genes, of which 49 genes were found with non-synonymous mutation and 15 genes were detected with frameshift mutation. By further use of 11 high-quality KASP markers in fine mapping, the candidate interval was finally delimited between KA330 and KA421 in the physical interval of 16,302,330-18,013,421 bp (1.71 Mb) on chromosome 4. The transcriptome data analysis and qRT-PCR expression analysis suggested six differently-expressed candidate genes, of which the LOC106758748 was annotated as a transcription factor MYB90 that was reported with a function in the flavonoid biosynthesis and served as key candidate gene regulating the seed coat color in mung bean. The results of this study can provide a theoretical basis for the cloning and utilization of the genes related to seed coat color in mung bean seed breeding.
  • Review
    CHI Xiaona,ZHANG Huanhuan,GU Wenyuan,ZHANG Xingmin,WANG Yuping
    As one of the important mechanisms of epigenetic regulation, usually occurs in plant cytosine bases, including CG, CHG and CHH. DNA methylation mainly affects chromatin structure and gene transcription level. DNA methylation plays important roles in transcriptional regulation and maintaining the genome stability. Abiotic stresses affect plant growth and reproduction and ultimately lead to plant death. Based on existing research findings, DNA methylation can induce phenotypic alterations in plants under stress.To cope with abiotic stresses, the change mechanism of DNA methylation level during growth is affected by methylase and demethylase. The signal transduction pathways can change the expression of some stress response genes, thus causing changes in plant morphology, physiology and biochemistry to adapt to adversity. Some genes are upregulated (initiate) or downregulated (close down) in expression in order to assure the adaptive growth and development of plant, thus enabling plants to adapt and resist stress damage to a certain extent. This article reviews the DNA methylation modification and its role in transcriptional regulation, research progress in the growth and development of horticultural plants, and the epigenetic regulation of abiotic stress as well as the problems and prospective of horticultural plants. It provides a reference for the genetic improvement of horticultural plants and deciphering the mechanism of stress resistance.
  • Research Articles
    MA Xiao-ding,CUI Di,HAN Bing,JIAO Cheng-zhi,HAN Long-zhi
    DNA fingerprinting analysis that enables assigning uniform identity information for each rice germplasm is of great significance for identifying the genetic basis of rice germplasm resources, improving their utilization efficiency and protecting the intellectual property rights of the seed industry in China. In this study, using 5374 rice accessions that have been genotyped by the whole-genome resequencing, two sets of genome-wide DNA fingerprinting standards were established through the selection of reference sample resources, analysis of high-quality SNP loci, and selection of the optimal number of SNPs and SNP combinations. Through principal component analysis and phylogenetic tree analysis, SNPs in the collection of fingerprinting standards 1 and 2 could represent 94,197 high-quality population common SNPs applicable for the population genetic diversity. In addition, population genetic similarity analysis verified the effectiveness of fingerprinting standards 1 and 2 to uncover the genetic similarity identification of rice germplasm resources. This study is expected to provide technical support for the conservation and utilization of rice germplasm resources and the protection of intellectual property rights in the seed industry, and to provide reference for the development of DNA fingerprinting standards for other crops.
  • Review
    JIANG Chun-xiu,YAO Wei,ZHANG Mu-qing,DENG Zu-hu
    Journal of Plant Genetic Resources. 2023, 24(2): 349-356. https://doi.org/10.13430/j.cnki.jpgr.20220801001
    Fluorescence in situ hybridization (FISH, fluorescence in situ hybridization) is a powerful tool for molecular cytogenetics studies and is able to authentically allocate particular DNA or RNA sequences on chromosomes. With the development of the genome sequencing technology, the reduction of sequencing cost and the publishment of a large number of species genome information, Oligonucleotide (Oligo) probes based on high-throughput sequencing and reference genome were developed showing the advantages in FISH. In comparison with the traditional probes, Oligo-FISH can further reveal the evolution, inheritance and variation of chromosomes more precisely and deeply in plant evolution.This paper reviews the types and applications of target DNA and fluorescent probes in the development of fluorescence labeling, as well as the types and preparation techniques of oligonucleotide probes, mainly focusing on the origin and development of Oligo-FISH and its application in plants, which plays an important role in the identification of plant chromosomes and plant homologous chromosomes. Since the karyotype of species and genera can be constructed by Oligo-FISH technology, the results of Oligo-FISH can provide guidance for genome assembly of crops in this genus which have no complete genomes. Oligo painting can also solve the problem of fusion and exchange between chromosomes of heteropolyploid species and accurately detect whether there is translocation and heterologous recombination between chromosomes. Therefore, the development of Oligo-FISH technology provides strong support for the assembly of the genome at chromosome level. In the future, Oligo-FISH technology combined with signal amplification technology can overcome the challenge of low Oligo probes with high concentration of repeat sequences in regions, and visualize limited gene regions, such as the detection of promoters or enhancers or the localization of gene segments in transgenes. These studies will make better use of the research results of species genetics and evolution to further ensure, assist and innovate the improvement and development of crop genetics and breeding.
  • gexuanliang,,, and
    For the purposes of crop breeding, earliness is an excellent comprehensive resistant character. Therefore, exploring how to combine conventional breeding methods with molecular biotechnology to shorten the growth period of the main crop varieties has very important significance for the development of crop production. This paper summarizes the crop earliness related traits, focuses on the current situation of related traits location and genetic analysis of crop earliness and proposes existing problems in current crop earliness breeding and future research prospects.
  • Research Articles
    LI Ying,LIU Haicui,SHI Xiaoxu,SHI Lyu,HAN Xiao,LIU Jian,WEI Yafeng
    In order to improve the utilization efficiency of naked barley germplasm resources in China, 398 accessions of naked barley from different regions were used to analyze the phenotypic diversity at 18 traits, followed by the analysis of coefficient of variation analysis, diversity index analysis, correlation analysis, principal component analysis and cluster analysis. The results revealed abundant variations among phenotypic traits in different resources. The diversity index of the nine quality traits was 0.66 to 2.06, with an average value of 1.42, and the highest value in plant height, kernels per spike and the smallest value in kernel rows. The traits had 4.71% (kernel color) to 61.03% (heading date) of the coefficient of variation, with an average value of 26.59%. The correlation analysis of nine quantitative traits indicated that spikes per plant, spike length, kernels per spike, thousand kernels weight and setting rate could be deployed as the main target traits for high yield naked barley varieties breeding in the future. The results of principal component analysis showed that the cumulative contribution rate of the five principal component factors was 64.297%. Among them, heading date, plant height, row type and thousand kernels weight were the main factors contributing to the phenotypic differences of naked barley. Combined with the membership function analysis, the comprehensive scores (F value) were calculated. Jiangsuyuanmai No. 33, VII-131, Yumimai, Jiangsu yuan mai No. 58, Jianhutuanliulengzi, Daimaoyuanmai, Jiangsuyuanmai No. 65, Jiangsuyuanmai No. 23, Jiangsuyuanmai No. 20 and Jiangsuyuanmai No. 22 had the highest scores. These materials were divided into four groups by systematic clustering analysis and the clustering results were not strongly correlated with geographic location. These results could provide an important reference for the utilization of naked barley accessions and variety breeding.
  • Review
    YU Dian,GUO Weileng,DING Yang,LIU Lei,GUO Rui,WANG Dan,SUN Yugang,GUO Changhong
    Abiotic stress limits plant growth and development, causes yield losses in crops, and severe abiotic stress can even result in the death of plant. Plants have evolved a series of stress response mechanisms to adapt to abiotic stress, including the myo-inositol (MI) metabolic pathway. MI represents a class of small polar molecules with stable chemical properties. Plants can respond to a variety of abiotic stress by participating in osmoregulatory pathways through accumulating the glycoside derivatives of MI. Myo-inositol-1-phosphate synthase (MIPS), inositol monophosphate phosphatase (IMP), and myo-inositol oxygenase (MIOX) play a role in the process of the biosynthesis or decomposition of MI. They are involved in the synthesis of L-ascorbic acid (L-AsA) and cell wall polysaccharides by regulating the content of MI in plant and a series of subsequent complex transformation pathways, and ultimately response to abiotic stresses such as salt, drought, alkali, and low temperature. This paper reviewed the research progress of the structure, biological functions of MI, MI metabolic pathway-related enzymes and its derivatives in plants response to abiotic stresses, providing an outlook to the future research focuses. This study aims to provide a theoretical basis for enhancing plant resistance to abiotic stresses by utilizing MI metabolism and breeding stress-resistant plant varieties.
  • Review
    NING Gong-wei,YANG Sheng-mei,SONG Wei-xi,LI You-yong,TANG Yi-chun,ZHAO Hong-yan,LIU Ben-ying
    Tea[Camellia sinensis (L.) O.Kuntze]germplasms are strategic resources ensuring the high quality development of tea industry, and raw materials enabling the original innovation in tea science and technology, breeding and development of new products with special characteristics.Studies on tea germplasms are of great value and significance considering the relevance on the innovation and sustainability of tea seed industry.Yunnan lies in the Southwest China,the long history of tea growing and the unique climate and geographical conditions of low latitude plateau have bred rich tea germplasm resources, a large number of wild and cultivated ancient tea plants are extensively distributed in Yunnan province, which is the origin center of tea plant in the world and the province with the largest species, quantity and distribution of tea group plant,after 60 years of research, with the hard work of scientific and technological workers and the active support of relevant departments, Yunnan tea germplasm resources have achieved fruitful results in the investigation and collection, conservation and cataloguing, identification and evaluation, and innovative utilization, and a series of significant progress has been made.This paper systematically expouned the main progress and existing problems of Yunnan tea germplasm resources research in the past 60 years,meanwhile,the future development direction of tea germplasm resources was discussed and prospected, which provided a reference for the research on tea germplasm resources.
  • Research Articles
    JIA Si-nian,WEI Qian-han,MIAO Rong,PENG Yun-ling,LIU Yun-jun
    The immature embryos of maize are able to form embryogenic calli through tissue culture, and are usually used as explants in genetic transformation. The molecular mechanism in the process of maize embryonic callus formation remains fully illustrated. To reveal the candidate genes that are involved in the callus formation of maize, two types of calli (type I, well growth; type II, poor growth) from F3 embryos of maize inbred line CAL28 × Zheng58 were harvested for the RNA-seq analysis. 4419 differentially expressed genes (DEGs) were revealed between two types, including 1571 up regulated genes and 2848 down regulated genes. GO enrichment analysis showed that DEGs were mainly enriched in the pathways such as cellular process, catalytic activity, and cell component. KEGG enrichment analysis showed that the enrichment of DEGs were mainly involved in phenylpropanoid biosynthesis and the plant hormone signal transduction pathway. Among the early auxin responses genes, eight AUX/IAA genes including IAA23IAA33IAA41, and four GH3 genes were upregulated in type I callus. A total of 2968 transcription factors belonging to 56 transcription factor families in DEGs were significantly enriched. The expression levels of ZmEREB53ZmEREB206ZmEREB184ZmLBD10ZmLBD24ZmLBD31ZmLBD32ZmWOX5b and ZmWOX9b, which are from AP2, WOX and LBD transcription factor families, were significantly up-regulated in type I callus. Genetic manipulation of these target genes may possibly promote the formation of maize callus. Collectively, this study identified candidate DEGs with great application potential, which provide theoretical reference for deciphering the molecular mechanism of maize callus formation.
  • Research Articles
    LI Yan-zhe,XIONG Ya-wen,XU Ya-nan,TANG Wei,ZHANG Hong-mei,ZHANG Wei,LIU Xiao-qing,WANG Qiong,XU Wen-jing,ZHANG Qun,CHEN Hua-tao
    Soybean is rich in nutrients and active substances. Oligosaccharides are beneficial functional components for human health, and identification of soybean oligosaccharide specific germplasms is of great practical significance. In this study, the content of oligosaccharides, including sucrose, raffinose, stachyose and total oligosaccharide, were quantified by high performance liquid chromatography (HPLC) method in a population of 264 soybean genotypes that were cultivated at two environments. It was shown that among the three oligosaccharides, sucrose accounts for the highest proportion of total oligosaccharides, and raffinose accounts for the lowest proportion. The total oligosaccharide content in Sanya city of Hainan province and Nanjing city of Jiangsu province ranged from 6.18%-11.46% and 4.19%-13.80%, respectively. Ten oligosaccharide specific genotypes with stable performance at different environments were obtained. Genome-wide association study(GWAS) was carried out by combining phenotypic and genotypic data of oligosaccharide content in natural soybean population. SNPs significantly associated with oligosaccharides content were identified and candidate genes were considered to be related with oligosaccharide/sucrose. Collectively, this study provided germplasm resources applicable for the selection and breeding of special soybean varieties, and also provided foundation for further exploring oligosaccharide candidate genes and developing their molecular markers in soybean.
  • Review
    LIU Chang-le,GUO Yue,LI Fang-fang,YUAN Zi-cheng,LONG Wei-hua,PU Hui-ming and HU Mao-long
    Journal of Plant Genetic Resources. 2022, 23(2): 333-345. https://doi.org/10.13430/j.cnki.jpgr.20211215001
    Field weeds are the main factors affecting crop quality and yield,and chemical weed control is the primary strategy in modern agricultural production. Acetolactate synthase (ALS),also known as acetohydroxyacid synthase,is the critical enzyme in the biosynthesis of branched amino acids in plants. ALS inhibitor herbicides are also called ALS herbicides,which inhibit the biosynthesis of branched-chain amino acids in plants by disturbing the binding of ALS to substrates,achieving the purpose of killing weeds. With the widespread application of ALS herbicides in agricultural production,the problem of herbicide residues on subsequent crops is becoming more and more serious. The impact on crop yield and quality is particularly obvious. Thus,breeding for cultivars resistant to these herbicides would bring great advantage in effective weed control. Germplasm resistant to ALS herbicides has been created in a variety of crops through chemical mutagenesis and natural mutation,and resistant varieties have been successfully developed. In this study,the characteristics,types and scope of application for ALS herbicides,the resistance mechanism of ALS herbicide-resistant crops,and the research progress of germplasm creation and utilization of ALS herbicide-resistant crops were reviewed,which provides a better understanding of crops resistant to ALS herbicides. The innovation of herbicide germplasm and variety selection can provide reference,and make a simple prediction for the possible development of ALSresistant herbicide crops in the future.
  • Research Articles
    LI Qinghua,ZHU Yebao,ZHENG Changlin,CHEN Wenjie,JIANG Chuan,WANG Jinying
    This study reported the evaluation of the grain quality traits of rice landraces that were collected from "The Third National Action on Crop Germplasm Resources Survey and Collection" in 2017-2021. Out of 165 white and red grain samples, the highest variation coefficient was observed on the chalkiness of sticky rice, of which the coefficient of indica white grain was as high as 148.91%. The transparency was also detected with high variation coefficient, while the coefficient of brownish was below 5.0%. The variation coefficient of the waxy ratio amongst waxy rice was over 70.0%, the whiteness and the amylose content have lower value of the variation coefficient, while that of the three indexes including brownish, alkali elimination value and gel consistency were below 10.0%. In terms of the grain quality indexes that reaching the standard, the qualified ratio of whole grains or their chalkiness of sticky rice were below 50%, while the qualified ratio of other indexes were above 65.0%. For the glutinous rice, the qualified ratio of whole grains and the amylose content were around 50.0%, and that of the other indexes was higher than 65.0%. The cooking and edible quality is an important aspect in evaluating high-quality rice as well. Among all the varieties of sticky rice and glutinous rice, 60.7% and 35.4%, respectively, of which have reached or above the Grade 3 level issued by the Ministry of Agriculture and Rural Affairs on the three indexes of cooking and edible quality. Compared with the landraces that were collected during the second national survey in Fujian, the amount of landraces with high value of cooking and edible quality has increased significantly within the third survey. Through this study, 10 landraces were identified reaching the high-quality standard issued by the Ministry of Agriculture and Rural Affairs, which provide a material basis for the development of high-quality rice varieties in the future. In addition, 15 germplasms with high amylose content have been identified, which can be used as new raw materials for processing purpose specifically. The mid-colored rice were found with relatively rich amount in local landraces, accounting for about 20.0% of the total, they can provide valuable resources for future breeding and production of rice varieties with special function. In the future, works on the evaluation of grain quality for local landraces should be improved, and excellent germplasm resources would provide a material basis as well as promote the breeding of new superior rice varieties.
  • Review
    LI Jie,LI Tingge,WANG Tongxin,WANG Jian
    Anthocyanins and betalains are both natural water-soluble pigments with similar distribution and functions in plants. Anthocyanins is a type of phenylalanine-derived pigment, and the betalains is a tyrosine-derived pigment that contains the chromophore betalamic acid. Anthocyanins are widely distributed in plants, but in Caryophyllaceae plants, betalains present instead of anthocyanins. It is worth attention that anthocyanins and betalains have never been found in the same plant at the same time. This mutual exclusion may be raised by accident in evolution, or the co-existence of both pigments would bring troubles in plant survival. This article reviewed and discussed the general characters of anthocyanins and betalains, the biosynthetic pathways and their regulations, the cases of induced co-existence of the two pigments, and the possible reasons for the mutual exclusion between the two pigments. In addition, the possible mechanism of the mutual repulsion of the two pigments, the research focuses for the future, and the possible application value in molecular breeding are also prospected. The purpose of this article is to better understand the relationship between anthocyanins and betalains through the review and prospect of previous studies, reveal the mechanisms for their mutual exclusion, as well as provide new ideas and methods for research and application in related fields.