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  • Review
    SHAO Yujiao,KANG Lei,LI Zaiyun
    Chinese woad (Isatis indigotica Fort., 2n=14; Radix Isatidis) is the traditional Chinese medicinal plant widely used in China, and serves as the germplasm resources in crop genetic improvement. This article reviews the progresses in the genomic structure, bioactive compounds and their biosynthesis, as well as distant hybridization with other crop species. The genome size of Chinese woad is about 300 Mb with the tPCK karyotype and 30,000 protein coding genes, and the high quality reference genome reveals the candidate genes and synthesis pathways for main bioactive compounds, indole alkaloids, phenylpropanoids and terpenoids. Through making crosses (male parent) with Brassica rapa and B. napus, the non-classical hybrids containing few chromosomes and fragments of Chinese woad are produced. The somatic hybrids with radish were found with chromosomes of both parents, while they failed to produce seeds by either selfing or backcrossing. The somatic hybrids with B. rapa ssp. chinensis (L.) P. Hanelt show its duplicated chromosomes but male fertile. The somatic hybrids with B. napus derive the whole set of rapeseed-woad additional lines, after successive backcrossing with B. napus. Several lines, if compared to the woad, showed improved resistance against many viruses. The recombinant mitochondria DNA molecule produced during the somatic fusion causes the new cytoplasmic male sterility, and the fertility restoration is realized by the introgression of the gene(s) from one particular chromosome of woad. Finally, we discuss the future genetic study and their utilization based on their novel additional lines.
  • Research Articles
    GAO Huihui,DONG Bin,WANG Xingyue,DONG Linxin,MAYAMIKO Masangano,SHEN Yifan,TANG Pengbin,WEI Pengcheng,YANG Lei,QIU Lijuan,WANG Xiaobo
    The beany flavor and potential allergenicity of soybean caused by Lox and 7S globulin limit human consumption. Breeding for soybean varieties with Lox and 7S globulin deficiency or high 11S/7S ratio is, therefore, of interest to improve the nutritional value and process different soybean products. In this study, the protein subunit composition of 2713 soybean germplasms was determined by the optimized soybean protein SDS-PAGE extraction method. The soybean germplasm resources with different protein subunit composition types were excavated, and the genetic and environmental factors affecting the protein subunit content were analyzed. The results identified a significant negative correlation between 7S globulin and 11S globulin. The 11S/7S ratio of local varieties was higher than that of modern varieties. A significant difference on the content and ratio of 7S and 11S globulin were observed in samples harvested from years. There was no significant correlation between 7S and 11S globulin and their subunits and protein and oil content. A total of 15 soybean germplasm resources with specific composition of soybean protein subunits were screened, including four showing 11S/7S ratio greater than 3.0 without subunit structural variation, five with Lox deletion, one with α' subunit deletion, two with α subunit deletion, one with β subunit deletion, one with 11S/7S ratio greater than 3.0 and Lox deletion, and one with complete deletion of 7S subunit. The identification of these germplasms laid a material foundation in breeding of high-quality soybean varieties applicable for different soybean products.
  • Research Articles
    PAN Bowen,WEI Bingxin,SU Baofeng,JU Yanlun,LIU Chonghuai,FAN Xiucai,ZHANG Ying,SUN Lei,JIANG Jianfu,FANG Yulin
    Grafting is beneficial in enhancing the adaptability to biotic and abiotic stresses, and improving the yield and quality of grapes. There are varieties of grape rootstocks, while their precise clarification become complex and difficult. Deep learning, capable of rapidly capturing deep features from images, has been extensively applied in the field of plant image classification and recognition. In this study, the mature leaf images of 30 grape rootstocks were deployed to construct a dataset, comprising 13547 grape rootstock leaf images. Four convolutional neural networks, GoogleNet, ResNet-50, ResNet-101 and VGG-16, were used for image recognition. The results show that the classification network with the highest accuracy is ResNet-101, and the accuracy reaches 97.5 % under the optimal model parameters (learning rate:0.005, mini-batch size:32, Max epochs:50). Among the 30 varieties, the average prediction precision rate was 92.59%, and the prediction precision reaching 100% was observed in seven varieties. The recall rate of eight varieties reached 100%, and the average recall rate was 91.08 %. The leaf surface texture, leaf vein and leaf margin were major factors that influence variety classification. This study confirmed the application capacity of deep learning network models in real-time automatic identification of grape rootstocks, thus providing reference for the protection, utilization, clasification research of grape rootstock varieties and the variety recognition of other crops.
  • Research Articles
    KANG Xilu, HAN Bohui, WANG Xiao, HAN Haiming, ZHOU Shenghui, LU Yuqing, LIU Weihua, LI Xiuquan, YANG Xinming, ZHANG Jinpeng, LI Lihui
    Journal of Plant Genetic Resources. 2024, 25(2): 193-205. https://doi.org/10.13430/j.cnki.jpgr.20230810002
    Agropyron cristatum L. (2n = 4x = 28, PPPP) with a large amount of alien elite genes are valuable genetic resources for the genetic improvement of wheat. According to previous studies, the genes on chromosome 1P of A.cristatum can improve plant leaf shape. However, it is unclear that the leaf shape changes and possible linkage drag exist in the translocation lines. The aim of this study is to detect the genetic effect of wheat-A.cristatum translocation lines T1PS·1AL and T1AS·1PL on major agronomic traits in different wheat backgrounds, in which wheat-A.cristatum translocation lines 1PS and 1PL were crossed with eight common wheat varieties, followed by investigation and analysis of agronomic traits in F2 segregation population. The results showed that A.cristatum chromosome short arm 1PS reduced the length of top third leaves and its plant height reduction level was 3-8 cm while no significant difference on yield traits were discovered. Furthermore, the plant phenotype of the translocation line T1AS·1PL were shaped with a decrease in the grain yield than those of non-translocation plants. Offspring performance of translocation Chromosome in related to both wheat genetic backgrounds and A.cristatum alien chromosome. Finally, we screened 75 F2 individual plants with favourable leaf shape and unchanged yield traits to be used for wheat breeding. In conclusion, this study reported two pre-breeding germplasms of wheat-A. cristatum 1P translocation lines had significant genetic effects on plant architecture improvement, which could guide the future utilization of A. cristatum 1P chromosome translocation fragments.
  • Review
    YANG Dewei,ZHANG Haifeng,YU Wenquan
    Agricultural germplasm resources mainly include crops, livestock and poultry, agricultural microorganisms and medicinal plants. There are 134,000 crop germplasm resources preserved in China, among which 74,000 are rice germplasm resources. How to accurately evaluate and utilize such huge rice germplasm resources is of great significance in rice germplasm innovation and breeding. In this paper, we reviewed the progress in collection, evaluation and accurate identification of rice germplasm resources, creation of new strains of rice, utilization of heterosis of rice, new techniques and methods of rice germplasm creation, and exploration and utilization of excellent genetic resources of rice, and summarized a new model of rice germplasm resource creation and utilization. Finally, this article discussed the current problems of rice core germplasm construction, germplasm resources identification and mining, and germplasm resources sharing and win-win mechanism. At the same time, we analyzed and prospeced how to strengthen the construction of specialized core seed resources, the accurate identification of germplasm resources, the innovative research of germplasm resources, the sharing mechanism of germplasm resources and the cooperation and exchange of germplasm resources, in order to provide some reference and help for further development of the identification, evaluation and innovative utilization of rice germplasm resources.
  • Review
    HUANG Yanbo,LIN Chuhang,LIU Fengluan
    There are about 1000 species of Salvia L. in the world, and a large number of species have been developed in many aspects of medicine, ornamental, edible as well as essential oils and health care. In China, there are abundant germplasm resources including 84 species and 24 varieties, while only one native species, Salvia miltiorrhiza Bunge, is widely cultivated and used for medicinal purpose. It is urgent to investigate and classify their growth habits, morphological characteristics and horticultural characteristics, in order to promote their efficient development and popularization. Based on classical taxonomy and solid data obtained from field investigation and cultivation observation in the past 13 years, this article focuses on the classification and characterization of the horticultural characteristics of Salvia L., including six aspects, such as end-use, flowering period, flower color, flower size, stem characteristics and garden shape. Spring-flowered (April-June), summer-flowered (July-August), and autumn-flowered (September-November) types were classified according to flowering periods, while purple, blue, red, pink, yellow and white flower styles were categorized based on flower colors. There were four levels for flower sizes: small (<1.5 cm), medium (1.5-3.0 cm), medium-large (3.0-4.5 cm), and large (>4.5 cm), and three forms for stem types: trailing, cespitose, and erect. Notable flexibility were displayed in garden shape by a number of germplasms. The majority of domestic sage resources are the cespitose herbs with medium-sized (large) purple and blue flowers that bloom in the spring. This study improved the applied classification system of Salvia L., and provided reference for further development and extensive application of Salvia L. species in China.
  • Review
    YU Dian,GUO Weileng,DING Yang,LIU Lei,GUO Rui,WANG Dan,SUN Yugang,GUO Changhong
    Abiotic stress limits plant growth and development, causes yield losses in crops, and severe abiotic stress can even result in the death of plant. Plants have evolved a series of stress response mechanisms to adapt to abiotic stress, including the myo-inositol (MI) metabolic pathway. MI represents a class of small polar molecules with stable chemical properties. Plants can respond to a variety of abiotic stress by participating in osmoregulatory pathways through accumulating the glycoside derivatives of MI. Myo-inositol-1-phosphate synthase (MIPS), inositol monophosphate phosphatase (IMP), and myo-inositol oxygenase (MIOX) play a role in the process of the biosynthesis or decomposition of MI. They are involved in the synthesis of L-ascorbic acid (L-AsA) and cell wall polysaccharides by regulating the content of MI in plant and a series of subsequent complex transformation pathways, and ultimately response to abiotic stresses such as salt, drought, alkali, and low temperature. This paper reviewed the research progress of the structure, biological functions of MI, MI metabolic pathway-related enzymes and its derivatives in plants response to abiotic stresses, providing an outlook to the future research focuses. This study aims to provide a theoretical basis for enhancing plant resistance to abiotic stresses by utilizing MI metabolism and breeding stress-resistant plant varieties.
  • Research Articles
    LUO Sifang,ZHANG Zuming,LIU Jiacheng,SUN Jingxian,YANG Yuehua,LAI Shengwei,XIE Lifang,NIU Wangcui,YAN Xiang,CHEN Zhaoxing
    Through cooperating with the fruit industry authorities of counties (districts) in Gannan (southern Jiangxi province, China) and visiting fruit farmers, we conducted the survey of wild Fortunella hindsii germplasm resources and collected 716 samples for phenotype characterization. The F. hindsii germplasm resources were found in Anyuan, Longnan, Zhanggong, Chongyi, Yudu, Xinfeng and other counties (districts) in Gannan, Jiangxi province, China. It can be divided into wild and artificial transplantation, and the main habitat is primeval forest, forest, valleys, hills and bonsai. There were phenotypic variations at 16 traits including tree posture, internode length, thorn number, thorn length, leaf length, leaf width, petiole, leaf shape, wing leaf, leaf tip lack of engraving, single fruit weight, fruit surface main-color, fruit surface variegation, seed number, oil cell obviousness, and peel thickness. Based on the phenotypic datasets, these samples were classified into four categories at Euclidean distance equal to 17.5, and further less than 14 into 8 subgroups. Principal component analysis was performed based on 16 traits identified 6 principal components with eigenvalues greater than 1 and associating with agronomic traits. To meet the need of citrus industry, 3 thornless, 34 seedless, 67 big-fruit and 12 late-ripening were selected. To sum up, the results of wild F. hindsii in Gannan have clear valuable for the commercial breeding of new F. hindsii varieties and the development of the citrus industry in future.
  • Research Articles
    XUE Yapeng,WANG Rong,CHAI Xiaojiao,WANG Ruonan,WANG Qian,LIU Shaoxiong,WANG Ruiyun,LIU Minxuan
    A two-year field trials and agronomic performance analysis were conducted in 179 foxtail millet accessions which are homonyms of the four famous landraces (Qinzhouhuang, Taohuami, Longshanxiaomi and Jinmi),as well as exploring the genetic relationships between the materials. Fifty-one accessions including the four original varieties were subjected for nutritional quality analysis. The significant differences on quantitative traits were detected in 179 accessions, while the quality traits were detected without much differences. Through the correlation analysis, a highly significant positive correlation between kernel weight of single ear and ear weight, as well as stalk weight and ear weight, were found. Principal component analysis showed that the first three principal components contributed to 89.414% of the cumulative variation. Gained from the composite score F-value calculated based on the results of principal component analysis, we observed the highest and lowest composite scores in Bocaigen-30 (F=7.42) and Yintianhan-27 (F=-9.17), respectively. Cluster analysis based on agronomic traits revealed that the 179 accessions were classified into four clusters with relatively concentrated clustering within homonyms varieties and greater similarity of agronomic traits. The results of phylogenetic relationships indicate that there are diverse evolutionary relationships among different varieties with the same name, and there may be gene exchange between different varieties with different names. The differences in nutritional quality among the four categories of famous foxtail millet were small, and the differences in all nutritional quality indexes except crude fiber were not significant. The crude protein and crude fat was positively correlated, while starch negatively correlated with protein and fat. The first six major components explained 88.414% of the cumulative variation and could basically cover the information of the 10 nutritional qualities. Based on the principal component analysis of nutritional qualities, the top ranked varieties were Bocaigen-77, Bocaigen-33, Bocaigen-44, Papocao-15, Jugenqi-25 and Yintianhan-13, combined with the comprehensive scores of different accessions.This study identifies and studies the agronomic traits, quality traits, and phylogenetic relationships of the four famous foxtail millet groups, which is of great significance for the protection and utilization of germplasm resources, as well as the excavation of excellent resources.
  • Research Articles
    DUAN Guoqi,LYU Na,SHI Yingyi,ZHANG Huai,LI Binfeng,HOU Liufei,XU Wenxiu,YAN Huili,HE Zhenyan,PING Junai
    Biomass is an important trait in forage sorghum, and positively correlates with plant height. In this study, two functional SNPs of the plant height associated gene SbPH11 were screened from 237 sorghum inbred lines. Three haplotypes, named SbPH11-Hap1, SbPH11-Hap2 and SbPH11-Hap3, at the SbPH11 locus with different combination of the two SNPs have been identified. The plant height of SbPH11-Hap2 materials was extremely significantly higher than that of SbPH11-Hap1 and SbPH11-Hap3 materials, and that of SbPH11-Hap1 materials was extremely significantly higher than that of SbPH11-Hap3 materials. The KASP marker that associates to plant height was developed based on two functional SNPs of the gene SbPH11. The marker was used to genotype and phenotype of 30 sorghum germplasms resources. The KASP marker was confirmed to accurately identify two functional SNPs of SbPH11. These results suggested that the newly-developed KASP marker can efficiently and accurately predict the plant height in sorghum germplasm resources, and can be applied in early screening and molecular marker-assisted selection in breeding for sorghum with higher plant height.
  • Review
    DU Chaojin, ZHANG Hanyao, LUO Xinping, SONG Yunlian, BI Jue, WANG Yuequan, ZHANG Huiyun
    Journal of Plant Genetic Resources. 2024, 25(2): 151-161. https://doi.org/10.13430/j.cnki.jpgr.20230811001
    As the reproductive organ of angiosperms, the flowers are a vital part of plants and a prime basis for the study of plant evolution andclassification. The development of the floral organ is affected by a variety of factors, such as the external environment and internal physiology, leading to different traits in different species or among the same species, and genes, as the key factors therein, play a vital role in the whole process, and the role of their genes in the regulation of floral development has been a hot topic of research. The five whorls of structures of the calyx, corolla, stamen, pistil, and ovule of the floral organ are regulated by five categories of genes, A, B, C, D, and E, in the AE model of floral development, and these genes form a complex gene regulatory network in the process of floral organ development. The expression or silencing of each category of genes leads to structural changes in the floral organs, but there are differences among different species. In this paper, we reviewed the regulatory roles of MADS-box, AP2/ERF gene family members AP1, AP2, AP3, PI, AG, SEP, AGL6, SHP, STK, and other genes such as NAP, SPL, TGA, PAN, and WOX in the construction of floral organs, and the effects of genes in the development of floral organs at the molecular level were analyzed. The influence of genes on floral organ development at the molecular level was also analyzed. This study provides a reference for further understanding the role of genes in the regulation of floral organ development in various plants.
  • Research Articles
    ZHOU Ya,ZHANG Xiang,ZHAO Quan,SUN Jianqiang,WANG Xiaobo,QIU Lijuan
    Double haploid techniques have been widely used to accelerate plant breeding, and in recent years, maize (Zea mays L.) lines containing mutations in the membrane protein (DMP) of the functionally unknown domain DUF679 have been used as haploidy-induced lines. In this study, soybean DMP genes with more than 60% homology with maize DMP gene were searched and bioinformatic analysis was performed. The molecular mechanism and biodiversity of GmDMP gene in soybean were investigated by using 2214 resequencing databases. The analysis results show that: GmDMP1Glyma.18G097400) and GmDMP2Glyma.18G098300) have high evolutionary affinity with maize DMP gene. The full length of genes is 645 bp, the homology rate of amino acid sequence is over 95%, and the number of encoded amino acids is completely consistent with the isoelectric point. The phosphorylation distribution differs at only one site. Both GmDMP1 and GmDMP2 genes have the same domain DUF679, which is more likely to locate in the ER, and both are transmembrane non-secreting hydrophilic proteins. There were 3 and 1 non-synonymous mutations of GmDMP1 and GmDMP2 genes in 2214 germplasm resources, respectively, consisting of 3 and 2 haplotypes. GmDMP1H3 has been strongly selected during domestication, and the mutation site of the GmDMP1H1 and GmDMP1H2 haplotypes is located in the DUF679 domain. It is possible to obtain a haploid inducible line by mutating two DMP genes in soybean, thus shortening the breeding life of soybean.
  • Research Articles
    XUE Tianyuan,LU Jinchunzi,HE Sixiao,YU Yi,CHEN Jingdong,WEN Jing,SHEN Jinxiong,FU Tingdong,ZENG Changli,WAN Heping
    Journal of Plant Genetic Resources. 2024, 25(3): 356-372. https://doi.org/10.13430/j.cnki.jpgr.20230827002
    The salt-alkali tolerance of 286 brassica rapeseed strains at the seedling stage was identified in this study. The indexes of leaves number, green leaves number, green leaves rate,shoot length, root length, and root weight under salt-alkali stress were determined through a hydroponics test. Various methods including comprehensive assessment value (D-value), extreme material screening analysis, correlation analysis, principal component analysis, membership function analysis, frequency analysis and stepwise regression analysis were used. A comprehensive evaluation model for saline-alkali tolerance was established for different genotypes of rapeseed germplasm at the seedling stage and appropriate evaluation indexes were selected. Under saline-alkali stress conditions, leaves number showed a negative correlation with plant height but the correlation coefficient between them was not significant; however other traits showed positive correlations that reached a significant or extremely significant level. Principal component analysis was employed to synthesize 7 salt-alkali tolerance indexes into 4 principal components which could represent 88.349% of the original data information on rape′s salt-alkali tolerance. Based on the relative importance (weight) of these four principal components, a comprehensive evaluation value (D-value) for salt and alkali tolerance among different genotypes was obtained. Four alkali-salt-tolerant brassica napus germplasms and four saline-sensitive germplasms were screened using membership function analysis and extreme material screening analysis respectively. The results from stepwise regression analysis indicated that salinity tolerance in brassica napus germplasm resources could be determined by measuring the green leaves number, green leaves rate, shoot weight as well as root length and root weight at the seedling stage while estimating D-value using regression equations.
  • Research Articles
    LI Yanxiao,ZHANG Chunlan,XU Xingyuan,CHEN Yanqiu,XIANG Dianjun,LIU Peng
    To obtain the sequence information of salt-tolerant genes in castor bean, we conducted a study to explore differentially expressed genes and related metabolic pathways under salt stress. We used seedling leaves of castor bean (cultivar Tongbi No. 5) treated with salt stress (300 mmol/L NaCl) for 0, 12, and 24 hours as experimental materials. Transcriptome sequencing analysis was performed using high-throughput sequencing technology. The results showed that there were 4822 and 3103 differentially expressed genes at 12 and 24 hours of salt stress, respectively. Co-expression pattern clustering analysis was conducted on the shared 1872 differentially expressed genes, and three expression patterns were identified. KEGG pathway analysis revealed significant enrichment of three pathways, namely valine, leucine, and isoleucine degradation (ko00280), plant circadian rhythm regulation (ko04712), and starch and sucrose metabolism (ko00500), in the adaptation process to salt stress. GO functional enrichment analysis showed that most differentially expressed genes were enriched in biological processes, with the highest enrichment in cellular processes (GO:0009987) and response to non-biological stress (GO:0009628). In addition, a total of 19 transcription factors were found to be involved in the salt stress response of castor bean. In the plant hormone signal transduction pathway, 42 differentially expressed genes were identified, with 97.6% of genes showing upregulated expression at 12 and 24 hours. Furthermore, we identified differentially expressed genes involved in photosynthesis, antioxidant regulation, and Na+, K+, and Ca2+ transport related to salt stress in castor bean seedlings. qRT-PCR results confirmed the reliability of the above experimental results. In conclusion, this study provides a theoretical basis for the exploration of salt-tolerant genes and the analysis of salt stress adaptation mechanisms in castor bean.
  • Research Articles
    WANG Sheng,JIA Li,TANG Jing,LI Haoyu,SONG Tingting,YUAN Juanwei,YAN Congsheng,FANG Ling,ZHANG Qian,SUN Yujun,JIANG Haikun,SUN Xueliang,ZHANG Tao
    This study identified a nuclear male sterile pepper line showing male sterility and parthenocarpy characteristics, and the agronomic traits and parthenocarpy fruit setting rate of the material were determined, and the parthenocarpy of the sterile line at different developmental stages and the parthenocarpy of the fertile line were determined for endogenous hormones. In addition, the genetic segregation of F2 population was analyzed by field identification and microscopic examination, and the fertility segregation ratio of the population was analyzed by using the molecular markers developed by pepper nuclear male sterile genes ms-3msw msmsms and msc-1.The results showed the vertical and horizontal diameters of the parthenocarpy fruit of the sterile line were larger, and the fruit setting rate of the fertile line and the sterile line was significantly different. The fruit setting rate of the fertile line was 22 %, and the fruit setting rate of the sterile line was 43%. The GA4 (gibberellin) content in the parthenocarpic fruit of the sterile line in different periods was significantly higher than that of the fertile line. There are 97 fertile lines and 30 sterile lines in the F2 population,with a separation ratio of 3.23 : 1,which is consistent with the Mendelian inheritance law. It showsd that its fertility was controlled by a recessive single gene. We named the nuclear male sterile line of pepper as GMS702AB. This study provides a new nuclear male sterile line valuable in pepper breeding and seed production.
  • Research Articles
    ZHANG Kun,WANG Yixiong,YANG Jindan,ZHANG Zheng,DONG Chunlin,REN Zhiqiang,WANG Chuangyun,CHANG Jianzhong
    In this study, 134 maize inbred lines were used as experimental materials to identify phenotypic variations at nine root traits at seedling stage, followed by the genome-wide association study (GWAS) using FarmCPU model based on 44935 SNP markers. The results showed that the phenotypic variations at nine root traits ranged from 10.86% to 55.96%, and the correlation between most phenotypes reached a highly significant level (P<0.001). The correlation coefficient between lateral root length and total root length was the highest (0.996), followed by that between the number of lateral roots and total roots (0.993). A total of 32 significantly associated SNPs were identified (P value arranged from 1.01e-11 to 9.74e-5), with phenotypic contribution rates ranging from 0.54% to 22.34%. Four, eight, three and nine significant SNPs were detected for main root length, total root length, maximum root length and lateral root length, respectively. Ten, seven and one significant SNPs were detected for total root number, lateral root number and adventitious root number, respectively. Fourteen SNPs were identified associating with multiple root traits. Twelve significant association sites were located within the intervals where root-related QTL (Quantitative trait locus) were reported. Forty-nine root-associated candidate genes were annotated, including formerly-identified GRMZM2G028386ABI4), GRMZM2G135713PUB23), GRMZM5G870592MYB98), GRMZM2G156861LOX1), GRMZM2G160005AUX16), GRMZM2G126936NAC2) and other important root candidate genes. Thus, this study provided reference for future cloning genes related to root development and analyzing the molecular mechanisms of root development in maize.
  • Research Articles
    AN Chen,SHAO Ye,PENG Yan,MAO Bigang,ZHAO Bingran
    To characterize the resistance of the novel rice mutant ALS179 to acetolactate synthase (ALS) inhibiting herbicides, this study analyzed the Ethyl Methyl Sulfone (EMS)-mutagenized novel rice mutant ALS179, together with wild-type Huahang31 (HH31), imidazolinone-tolerant rice ALS627 mutant, treated by four types of ALS-inhibiting herbicides by either seed coating or seedling spray treatment at different concentrations. The phenotypes and enzyme activity indexes were further determined to investigate the resistance of the mutant ALS179. The results showed that the mutant ALS179 showed various degrees of resistance to benensulfuron, imazethapyr, bispyribac-sodium and pyroxsulam after herbicide coating for seed soaking and seedling spraying, and the activities of acetolactate synthase, peroxidase, catalase and superoxide dismutase tended to decrease with increasing herbicide concentration. The enzyme activities of acetolactate synthase, superoxide dismutase, catalase, and peroxidase were higher in ALS179 than in wild-type HH31 under all treatment conditions, except for imidazoleisonicotinic acid treatment condition at high concentration where the enzyme activities of catalase and peroxidase were lower than those of wild-type HH31.Collectively, we found that the Ala179Val mutation conferred broad-spectrum resistance to ALS-inhibiting herbicides and provided genetic germplasm resources for the subsequent breeding of ALS-inhibiting herbicide broad-spectrum resistant rice lines.
  • GERMPLASM INNOVATION
    LIU Fangfang,ZHANG Qiqi,WAN Yingxiu,CAO Wenxin,LI Yao,LI Yan,ZHANG Pingzhi
    Fusarium head blight (FHB) is a devastating disease of wheat, which seriously reduces grain yield and quality. It is an effective way to prevent the damage of FHB by introducing resistant genes into wheat varieties. In this study, the wheat line L06486 that carries the FHB resistance genes Fhb1Fhb2Fhb4 and Fhb5, was used as the donor and crossed with the variety Jimai 24, which was high-yield and widely adaptive across the Huanghuai area of wheat planting, but highly susceptible to FHB. Then the acquired plants were crossed with the dwarf wheat line 206A. A large spray facility was used to carry out the fog-way inoculation of spore-fluid through scab on the ears of wheat, across F3 to F6 multiple generations and populations. The resistance of the selected F7 stable lines was validated by floret-inoculation and their resistant genes composition was identified with specific markers for Fhb1Fhb2Fhb4 and Fhb5. It showed that 106 F7 lines had improved resistance to FHB in comparing with the recipient parent Jimai 24. Out of these 106 lines, 98 lines showed a range of moderate susceptible to high resistance, and 105 lines carried 1 to 4 FHB resistance genes each. The frequencies of Fhb1Fhb2Fhb4 and Fhb5 presence were 96.23%, 41.51%, 18.87% and 87.74%, respectively. Lines with single or multiple Fhb genes showed higher resistance to FHB than those with none of Fhb gene; the more Fhb genes it carried, the higher resistance to FHB. Altogether, these selected lines will be valuable in improving the FHB resistance in Huanghuai wheat planting region in the future.
  • Research Articles
    WU Jinli,TANG Zeyang,LU Xin,ZHOU Zhiqiang,GUO Changhong,LI Xinhai
    Protein Disulfide Isomerase (PDI), a member of the thioredoxin superfamily, is an oxidoreductase widely exists in animals, plants and microorganisms. In plants, the formation and isomerization of protein disulfide bonds, which are mainly catalyzed by disulfide bond proteins, are crucial in the correct assembly and folding of proteins. In this study, based on the sequence similarity to the PDI genefamily in Arabidopsis thaliana, 21 PDI genes were identified and found on nine chromosomes of maize. The phylogenetic tree analysis showed that the maize PDI gene family members were divided into four evolutionary branches and 11 developmental groups, and within each group the gene structure and conserved motifs were similar. The analysis of cis-acting elements in the promoters identified cis-acting elements associating to stress, plant hormones and endosperm specific expression. By quantifying the transcriptional profiles, the high expression was detected in embryo, endosperm and grain. In endosperm, a downward trend followed by upward from 10 to 20 days after pollination was observed. Biodiversity analysis revealed that was diversity of ZmPDIL1-1 gene. The result of subcellular localization showed that ZmPDIL1-1 was located to the endoplasmic reticulum. Collectively, this study provided reference for the functional analysis of PDI gene family in maize.
  • Research Articles
    TANG Fen,ZHAO Lukuan,SU Yijun,XIAO Shizhuo,YUAN Rui,WENG Zongkuan,DAI Xibin,ZHOU Zhilin,CHEN Yanli,CAO Qinghe
    Evaluating the genetic relationship of sweetpotato varieties is an important prerequisite for understanding their genetic background and effectively utilizing germplasm resources. Using 23 pairs of InDel primers developed by our research group, genotype analysis was conducted on 305 registered sweetpotato varieties in China. A total of 56 bands were amplified, of which 53 bands were polymorphic, with a polymorphism rate of 94.6%. The average values of polymorphic information content (PIC), Nei's genetic diversity index (H), observed heterozygosity (Ho), and expected heterozygosity (He) are 0.4098, 0.4451, 0.6003 and 0.4460, respectively. Group structure analysis indicates that ΔK reaches maximum at the number of groups K=2, with a small peak at K=4. The northern and Yangtze River sweetpotato zone are evenly distributed within the two groups, while the majority (72.97%) of the southern sweetpotato zone converge in group 2. The principal coordinate analysis (PCoA) shows that there is some convergence in the southern sweetpotato zone, but there is no clear cluster division overall. The clustering results divided the population into four main groups. The varieties in the northern sweetpotato zone and the Yangtze River sweetpotato zone were evenly distributed in groups I, II, III and IV, while the southern sweetpotato zone (77.03%) was mainly concentrated in group IV. This clustering result is basically consistent with population structure research and principal coordinate analysis. Genealogy analysis identified the main parental materials of 13 registered varieties, and there was a situation of repeated use of parents for forward and reverse breeding in each breeding unit. This article combines molecular marker results with pedigree information, preliminarily indicating that the registered varieties of sweetpotatoes in China have close genetic relationships and narrow genetic backgrounds, providing reference for germplasm innovation and new variety selection of sweetpotatoes.
  • Review
    LI Jie,LI Tingge,WANG Tongxin,WANG Jian
    Anthocyanins and betalains are both natural water-soluble pigments with similar distribution and functions in plants. Anthocyanins is a type of phenylalanine-derived pigment, and the betalains is a tyrosine-derived pigment that contains the chromophore betalamic acid. Anthocyanins are widely distributed in plants, but in Caryophyllaceae plants, betalains present instead of anthocyanins. It is worth attention that anthocyanins and betalains have never been found in the same plant at the same time. This mutual exclusion may be raised by accident in evolution, or the co-existence of both pigments would bring troubles in plant survival. This article reviewed and discussed the general characters of anthocyanins and betalains, the biosynthetic pathways and their regulations, the cases of induced co-existence of the two pigments, and the possible reasons for the mutual exclusion between the two pigments. In addition, the possible mechanism of the mutual repulsion of the two pigments, the research focuses for the future, and the possible application value in molecular breeding are also prospected. The purpose of this article is to better understand the relationship between anthocyanins and betalains through the review and prospect of previous studies, reveal the mechanisms for their mutual exclusion, as well as provide new ideas and methods for research and application in related fields.
  • Research Articles
    NIU Xuejing,WANG Xindong,WANG Jinping,SUN Juan,QIE Yanmin,WANG Lina,GENG Lige
    Based on "The Third National Campaign of Crop Germplasm Census and Collection", genetic diversity analysis, correlation analysis, cluster analysis and principal component analysis were used to study and evaluate 136 sorghum germplasm resources collected from 2020 to 2021 in Hebei province. The results showed that there were abundant phenotypic variations in the collection. The diversity index of 15 phenotypic traits ranged from 0.0844 to 1.9926, and the coefficient of variation ranged from 4.69% to 68.00%. The genetic diversity of 1000-grain weight and the coefficient of variation of panicle shape were the highest. A significant positive correlation between plant height and panicle traits was detected. These germplasms were divided into three groups by cluster analysis, while three clusters didn’t correlate with the geographic collection sites. Cluster I showed the best performance in panicle traits and could be used in breeding for technical purposes. The plant height of cluster II was low, which can be used as dwarf resources in germplasm innovation. Cluster III showed the best yield traits which can be used in breeding for higher grain production. Principal component analysis simplified phenotypic trait factors into 5 principal components, with the cumulative contribution rate of 60.182%. The plant height, the panicle and grain traits were the main factors contributing to the phenotypic differences. Based on the comprehensive scores of 136 sorghum germplasms that ranged from 0.107 to 1.147, the top 10 elite germplasm resources such as Suning sorghum, Changsui sorghum, Tiaozhou sorghum and Luoshu were selected. Collectively, based on the evaluation of these newly collected sorghum germplasm resources in Hebei province, this study provided insights for the mining of elite sorghum germplasm and the innovative utilization of germplasm.
  • Research Articles
    ZHAI Linan,TANG Qingjie,ZHOU Shizhen,ZHOU Bangji,YUN Yong,WANG Huijian,HAN Yisheng,XING Funeng,YAN Xiaowei
    In order to comprehensively evaluate and analyze the resistance of Hainan common wild rice to leaf blast and ear neck blast, 2002 accessions collected from 11 different cities/counties in Hainan province were artificially inoculated with leaf blast at the seedling stage in the field for two consecutive years in 2022 and 2023. In addition, 995 accessions that had been pumped were artificially inoculated for ear neck blast resistance. 494 (24.68%) were identified to be resistant to leaf blast, among which 7 were immune and 17 were highly resistant. In the field, 1160 (57.94%) were resistant to leaf blast, of which 24 were immune and 233 were highly resistant. Out of 995 accessions that were tested for ear neck plague, 506 were resistant accounting for 50.85%, among which 23 were immune and 136 were highly resistant. The results showed that common wild rice accessions in Hainan were generally resistant to leaf blast or ear neck blast. The plant architecture in most of resistant germplasms was semi-erect or inclined, and a few showed upright or creeping. Accessions with high leaf distemper resistance were generally resistant to ear neck distemper after heading, and accessions with high immune or ear neck distemper resistance were generally resistant to leaf distemper. A total of 128 common wild rice materials with resistance to both leaf blast and ear neck blast were identified and evaluated. Collectively, this study provided a reference for the academic research and breeding utilization of rice blast resistance in Hainan wild rice.
  • Research Articles
    SUN Zhiguang,LU Baiguan,LIU Jinbo,LIU Yan,LI Jingfang,CHI Ming,CHEN Tingmu,LI Jian,YANG Bo,LIU Xiaomin,WANG Baoxiang,XU Dayong
    QTL mapping of germinability under submergence condition and pyramided effect analysis of stable sites were carried out, thus laying a foundation for fine mapping of QTL for germinability under submergence condition and marker-assisted breeding. Using an F2:3 population with 144 individuals derived from a cross between WR-4 (a weedy rice with strong germinability under submergence condition) and Guangbaixiangzhan (a susceptible indica variety, GBXZ), a high density genetic map containing 825 bin markers was produced based on 1K mGPS SNP chip. Ten QTL conferring tolerance to hypoxia were identified by complete interval mapping (ICIM). These QTL were found on chromosomes 3, 4, 7, 8, 9, and 10, with LOD values ranging from 3.6 to 21.3, explaining phenotypic variation of 3.0%-21.1%. Two major QTL (qGS4-1 and qGS7-1) withhigh LOD value and high phenotypic variance were repeatedly detected, and both loci could be the candidate for future gene cloning studies. According to the genotyping of bin markers in each QTL interval, different progenies were classified into WR type and GBXZ type. By further data processing and analysis of QTL stacking, it was found that individuals with more pyramided synergistic alleles showed longer coleoptile under submergence condition. Thus, these lines hosting multiple synergistic alleles might provide innovative resources for breeding rice cultivars with high germinability under submergence condition.
  • Short Communications
    LU Mingyan,WANG Qiang,YAN Xingkai,WU Chunhao,ZHAO Ying,ZHANG Maojun
    To provide reference for pear breeding, the genetic basis of fruit traits was investigated through three consecutive years, by taking use of F1 plants of seven hybridization combinations with Yanbiandaxiangshui as female parent, Hongxiangsu,Zaosu,Red clapp favorite,Jinsu,Jinmi,Eliyihao and Yunhongyihao as male parents. The results of F1 hybrids showed a central tendency at seven traits, including single fruit weight, fruit diameter, fruit length, stalk length, stalk thickness, fruit shape index, and soluble sugar content. The single fruit weight has a strong genetic tendency towards small fruit. The coefficient of variation at soluble solid content and fruit shape index was small, while the genetic transmissibility were high. The inheritance of stalk diameter tended to be medium to low, while the inheritance of stalk length, fruit diameter and fruit length tended to be medium to high. The traits including background color, persistency of sepals, depth of eye basin, flesh texture, juice, and flavor were greatly contributed by the maternal parent.Width of eye basin inherited tend to medium and aroma was influenced by male parents. The cover color variation was observed following the laws of intergenerational inheritance. Collectively, the results provided reference for studying the genetic laws of pear fruit traits and selecting parents for hybrid breeding.
  • Research Articles
    WANG Hongqian,KOU Yaping,YAO Chenyang,Meng Zhaoyang,WANG Jingjing,JIA Ruidong,ZHAO Xin,GE Hong,YANG Shuhua
    Fragrance volatile organic compounds play key role on exploitation and utilization in ornamental plants. In this study, headspace solid phase microextraction combined with gas chromatography mass spectrometry (HS-SPME-GC-MS) was used to determine and quantify the volatile organic compounds (VOCs) in five rose petals. Ninety-one VOCs were identified and classified into nine types: terpenes, alcohols, esters, aldehydes, alkanes, phenols, ketones, ethers, acids. Forty-five components were detected in R. centifolia; 52 components including five exclusive compositions were detected in R. ‘Morocco’; 40 compounds including two exclusive compositions were detected in R. ‘de Grasse’; 57 compounds including eight exclusive compositions were detected in R. ‘Duc de Fitzjames’; 63 compounds including 11 exclusive compositions were detected in R. × damascena. The compounds 2-Phenylethanol, Geraniol, β-Citronellol, and Geranyl acetate were predominant in five rose petals. R. × damascena had the highest content of VOCs, reaching 3622.68 ng/g, and the contents of VOCs in R. ‘Morocco’, R. ‘Duc de Fitzjames’, R. ‘de Grasse’, R.centifolia were 2507.07 ng/g, 2445.9 ng/g, 1394.54 ng/g, 883.38 ng/g, respectively. Heatmap cluster analysis and cluster analysis showed that R. × damascena was closely related to R.‘Duc de Fitzjames’, and the content of terpenes were significantly different in petals of five rose. Collectively, this study provided reference for future exploitation and utilization of Rosa genus resources.
  • Review
    ZHANG Jing,SUN Bingrui,MAO Xingxue,JIANG Liqun,LYU Shuwei,CHEN Wenfeng,FAN Zhilan,YU Hang,CHEN Pingli,LIU Qing,LI Chen
    Rice is one of the most important food crops in China, and rice production is an important guarantee for national food security. The traditional transplanting model has played an important role in increasing rice production, farmers' income, and agricultural development. With the development of social economy and changes in industrial factors, the significant reduction of rural labor forces urgently requires simplified cultivation methods. Direct seeding of rice flooding can save labor, resources, and effectively reduce weed damage, which is an efficient and economical cultivation mode with high popularization value at present. The decreased germination rate caused by hypoxia stress under submerged condition is the primary factor that hinders the application of direct seeding of rice flooding. In the abundant rice germplasm resources, there are excellent resources and genes tolerant to hypoxic stress. Exploring these excellent resources and genes tolerant to hypoxic stress and their application in developing submergence tolerant varieties suitable for direct seeding rice is the key to break through the bottleneck of popularization and application of direct seeding rice. This article reviewed the physiological characteristics, phenotyping methods, elite germplasm identification, genetic analysis, mechanism characterization of rice germinability under submerged condition and breeding application of functional genes. We expected to provide theoretical reference for deciphering the molecular mechanism of hypoxia-tolerant germination and selecting direct seeding rice varieties.
  • Research Articles
    YANG Zhenxin,ZHU Yajing,LU Zhuangyue,LUO Xi,SU Xin,CHENG Sili,CAI Nianhui,XU Yulan,WANG Dexin
    The growth, leaf morphology, chlorophyll synthesis and photosynthetic parameters in diploid and triploid Passiflora edulis Mantianxing were measured. The results showed that: (1) Compared with triploid plants, the triploid plants showed shorter stalk and petiole, narrower leaves and shorter distance between than that of diploid leaves, and the content of carotenoid was no significant difference. (2) The total content of chlorophyll, chlorophyll a and chlorophyll b synthesized by triploid leaves was higher in triploid. (3) During the diurnal process of photosynthesis, both diploid and triploid had a lunch break and the net photosynthetic rate (Pn), transpiration rate (Tr), stomatal conductance (Gs) and intercellular CO2 concentration (Ci) of triploid plant were higher than those of diploid plant, which were increased by 9.5%, 6.9%, 4.5% and 3.9%, respectively. (4) The variation trend of monthly photosynthesis in diploid and triploid was similar, both reaching the highest value in August and falling to the lowest value in December, both of which are single-peak curves. The PnTr and Gs of triploid Mantianxing are superior to diploid. (5) There was correlation between the indexes of the two ploidy plants, which indicated that the traits influenced and promoted each other to make the plant grow normally. The size, opening and closing of stomata significantly affected the Pn and Tr of plant leaves. These results showed that the photosynthetic capacity and light energy utilization capacity of triploid Mantianxing were enhanced with the increase of gene dose, and the accumulation of chlorophyll synthesis content of triploid Mantianxing was increased.
  • Research Articles
    MENG Zhaoyang,KOU Yaping,GE Hong,LIU Ran,NIU Pengfei,JIA Ruidong,ZHAO Xin,LYU Yingmin,YANG Shuhua
    Improving the fragrance characteristics through hybridization is an important way of fragrant flower breeding. In this study, Headspace-Solid Phase Microextraction-Gas Chromatography-Mass Spectrometry (HS-SPME-GC-MS) was employed to determine the volatile organic compounds (VOCs) in blooming petals of the rose variety Mantingfanghua and its parents. Comparison analysis of VOCs showed that 25, 36 and 22 VOCs were identified in the blooming petals of Mantingfanghua, its paternal species Rosa beggeriana Schrenk and maternal variety Queen Elizabeth, respectively. The totally identified 59 components can be sorted to 8 major compounds based on their chemical structures, including alcohols, terpenes, esters, hydrocarbons, ethers, aldehydes, ketones and acids. Mantingfanghua has 10 components in common with Rosa beggeriana Schrenk, while 13 in common with Queen Elizabeth; Mantingfanghua has the VOCs composition in higher similarity to its maternal variety. The total VOCs content in Mantingfanghua was 579.70 ng/g, which was lower than that in its paternal species (13939.42 ng/g) and its maternal variety (1157.10 ng/g). The contents of terpenoids and benzenoids/phenylpropanoids were lower in Mantingfanghua than those in its parents; in opposite, the contents of sesquiterpenoids in Mantingfanghua were higher than those in its parents. Meanwhile, the content of fatty acid derivatives in Mantingfanghua fell in between those in their parents. Principal component analysis showed that the β-Cubebene, β-Cadinene, β-Caryophyllene were the main VOCs that may affect the fragrance from Mantingfanghua. This study provides insights for the genetic improvement of rose floral fragrance metabolism, which has important value for both theoretical and practical purpose.
  • Research Articles
    LIU Jindong,WANG Yamei,Liu Hongyan,MENG Yun,YE Guoyou
    Dry direct seeding method can effectively reduce human/resource consumption. Mesocotyl length (ML) affects the emergence and seedling vigor of dry direct seeding rice. Cultivating long ML varieties is the most economical and effective way to promote the popularization of the dry direct seeding method. Dry direct seeding has been popularized in Indica rice areas in South Asia and Southeast Asia, but less in Japonica rice areas. A number of candidate genes related to mesocotyl elongation have been found, but their reliability and applicability remain yet to be verified. Based on 97 identified candidate genes that modulate the mesocotyl elongation, we carried out candidate genes association analysis in two natural populations of Japonica rice, TROP and TEMP. Four significant candidate genes were identified, and each explained 4.7%-6.3% and 5.4%-6.7% phenotypic genetic variation in TROP and TEMP, respectively. Of these, three genes LOC_Os01g44130LOC_Os03g50560 and LOC_Os05g27790 were identified in both populations, while LOC_Os11g10990 and LOC_Os10g20860 were detected in the TROP and TEMP populations, respectively. The deduced proteins are annotated mainly involving in plant hormone synthesis and metabolism, signal transduction and plant growth process. Six and three superior haplotypes with potential used for molecular marker assisted breeding were further identified in TROP (LOC_Os05g27790-Hap3 and LOC_Os05g27790-Hap6LOC_Os03g50560-Hap1LOC_Os01g44130-Hap1 and LOC_Os11g10990-Hap1 and LOC_Os11g10990-Hap3) and TEMP (LOC_ Os05g27790-Hap6LOC_Os01g44130-Hap1 and LOC_Os10g20860-Hap5) populations. Collectively, these genes and their corresponding superior haplotypes identified in this study can be applied to the molecular breeding of rice varieties with long mesocotyl.
  • Research Articles
    WEI Xiaoyu,LIU Hong,MA Hui,BIE Tongde,SUN Ye
    In order to strengthen the protection and utilization of Cymbidium resources in China, ISSR markers were deployed to conduct the genetic diversity and fingerprint construction in this study. A total of 67 bands were detected with 11 primers in 96 samples, and the average of polymorphic bands rate is 73.63%, the number of alleles (Na) is 1.925, the number of effective alleles (Ne) is 1.450, the genetic diversity of Nei's is 0.277, and the Shannon index (I) is 0.427, the percentage of polymorphic loci (PPL) is 92.54%, the genetic diversity within populations (Hs) is 0.1934, the genetic differentiation coefficient (Gst) is 0.3009, the total genetic diversity (Ht) was 0.2767, and the average gene flow among populations(Nm) of Cymbidium is 1.1619, the fixation index of pairwise genetic differentiation among populations ranged from 0.002 to 0.527, with an average of 0.325. The systematic clustering results indicate that Cymbidium has high degree of genetic differentiation, which was divided into three groups by systematic clustering analysis, Cymbidium. goeringii and C. sinense were assigned to one category, while C. kanranC. goeringii var. longibracteatumC. faberiC. tortisepalum and C. ensifolium were in the second category, the hybrids were in a unique category, which has a large genetic distance from the other two categories. Principal coordinate analysis indicated that C. tortisepalum and C. goeringii showed a distant genetic relationship. 6 pairs of primers were selected to construct fingerprint QR codes for 96 species. Collectively, this study provided an important basis for the breeding and variety identification of Cymbidium in the future.
  • Research Articles
    SHEN Liang,ZHANG Piao,XU Rong,TAN Shixin,ZHU Jun,LI Xiaojin,LIU Yongping,CHEN Jun
    Cistanche salsa (C. A. Mey.) G. Beck is a parasitic herb of the genus Cistanche in the family Orobanchaceae, which has the largest number of host plant species identified. It is a traditional Chinese medicine commonly used in northwest China. To clarify the distribution of C. salsa resources and the identify host plants, 66 samples of C. salsa with parasitic roots were analyzed using DNA barcoding and morphological characters. The results indicated that C. salsa was widely distributed in regions of Xinjiang and Ningxia municipality, at the elevation ranging from 400 to 2000 meters. Specifically, the host plants in Yumin County, Tacheng City, Xinjiang Municipality including Seriphidium compactum (Fisch. ex DC.) PoljakovSeriphidium genus, Asteraceae) and Atriplex verrucifera Marsch. von Bieb. Atriplex genus, Amaranthaceae), the host plants in Tacheng County of Tacheng City including Kalidium cuspidatum Ung.-Sternb. (Kalidium genus, Amaranthaceae), A. verrucifera and Krascheninnikovia ceratoides (L.) Gueldenst. (Krascheninnikovia genus, Amaranthaceae), among which A. verrucifera was the dominanthost. The host plants in Habahe County, Altay City, Xinjiang Municipality including S. compactum Krascheninnikovia ewersmanniana (Stschegl. ex Losinsk.) Grubov (Krascheninnikovia genus, Amaranthaceae) and K. ceratoides, the host plants in Jimunai County of Altay City including K. ceratoides and S. compactum. In Yiwu County, Hami City, Xinjiang Municipality, Iljinia regelii (Bunge) Korovin (Iljinia genus, Amaranthaceae) served as the dominant host plant, and the host plants in Barkol County of Hami City including K. cuspidatum. Besides, Suaeda physophora Pall (Suaeda genus, Amaranthaceae) washost plant in the plantation of Jumisar of Changji City in Xinjiang Municipality. Kalidium gracile FenzlKalidium genus, Amaranthaceae) and Sympegma regelii Bunge (Sympegma genus, Amaranthaceae) were both host plants in Yanchi County of Ningxia Wuzhong region, with S. regelii being the dominanthost. And S. compactum is a new recorded host plantof C. salsa. Collectively, this study provided scientific basis for protection and breeding of C. salsa and its cultivated host plants in future.
  • Research Articles
    WANG Kejing,LI Xianghua
    The Northeast Inner Mongolia Autonomous Region is an important soybean production area of in China, and is also an experimental area of genetically modified soybeans. In order to understand the local wild soybean resources? situation and provide reference for safe cultivation of the genetically modified soybeans,we investigated the distribution of wild soybean populations in 61 discontinuous field plots in Zhalantun and Arun of Hulunbuir,as well as Keyouqian of Xingan League. Fifty-four plots(88.52%)were found to have soybeans,including three types: the wild populations,mixed populations of both wild and semi-wild soybeans,and a population of entirely semi-wild soybeans which was discovered for the first time. The sizes of most populations in this region were relatively small,showing ca. 72.2% of the populations being ≤ 1000 m2,and ca. 59.3% being ≤500 m2. The frequencies of wild soybean quadrats were above 80%,40%-60% and below 20% for ca. 46%, 41% and 13% of the plots. From the seeds of 836 single plants collected from 54 wild soybean populations,six seed-coat color types(black,bicolor,brown,brown-green,green and yellow-green)and three leaf-shape types (long oval, oval and lanceolate)were observed. The 100-seed weight of wild soybeans was relatively small,accounting for 84.57% for the type of ≤1.5 g in the total sample,with an average of 1.19±0.49 g. It was estimated that approximately 17.92%,29.48%,and 40.10% of the remaining idle lands may have potential distribution of wild soybeans. We found that the advanced agricultural ecosystem would reduce the density of wild soybeans in populations. The semi-wild soybean was found with higher probability in the long-term soybean growing area. This article also discussed the measures on safe cultivation of genetically modified soybeans in the Northeast Inner Mongolia in the future,as well as the protection of wild soybean resources.
  • Research Articles
    CAI Yibiao,SUN Zhencang,SHI Xinyao,GUAN Yuxiang,CHENG Jiajia,YANG Shuang,WANG Menglu,ZHANG Lei,WANG Chenyang,DING Hongke,WANG Faxiang,ZHAO Chunhua,SUN Han,WU Yongzhen,QIN Ran,CUI Fa
    qPh-3D is a major quantitative trait locus (QTL) regulating plant height (PH) in wheat. This locus could be repeatedly identified in datasets at 14 different environments in the recombinant inbred line (RIL) population derived from the cross between Kenong 9204 and Jing 411 (denoted as KJ-RILs). qPh-3D was mapped to the chromosomal region of KN3D:515.08-539.08 Mb, and the allele from parent Jing 411 could reduce PH. In this study, we aimed to further characterize the genetic mechanism of PH reduction caused by qPh-3D and clarify its genetic effects on yield-related traits, using the KJ-RILs population containing 187 lines as well as a natural mapping population consisting of 316 breeding varieties (advanced lines). In KJ-RILs, the qPh-3D allele from Jing 411 can significantly reduce PH via reducing all internode lengths without significant effect on spike length (SL), whereas it can reduce kernel yield per plant (KYPP) at certain level. Two markers AX-110160363 and AX-111109273, which closely link with qPh-3D, were used for genotyping in the natural mapping population with the yield-related phenotypic datasets. The qPh-3D allele with decreased PH was found with a positive effect on SL, but a significant negative effect on KYPP. Based on the breeding selection effect analysis at the qPh-3D locus, the qPh-3D allele with decreased PH was present in a higher proportion in wheat varieties released from Beijing and Shanxi in China, but lower in Shandong, Qinghai, Sichuan and the foreign countries. This allele was detected in a lower proportion in earlier varieties, while its presence in modern varieties was detected increasingly. In addition, a closely linked PCR-based InDel marker targeting the qPh-3D locuswas developed. Collectively, the findings of this study will provide theoretical guidance for future applications of qPh-3D in molecular breeding programs in wheat.
  • Research Articles
    LIN Shuangshuang,LU Peilan,YU Wenquan,ZHANG Haifeng,ZHAO Jieliang,CHEN Shuanglong,WENG Peiming,CHE Jianmei,GE Cibin
    Journal of Plant Genetic Resources. 2024, 25(3): 340-355. https://doi.org/10.13430/j.cnki.jpgr.20230609001
    During the Third National Crop Germplasm Resource Survey and Collection Action in Fujian province from 2017 to 2022, total 6235 accessions of crop germplasm resources including local crop varieties and their wild relatives were collected. The numbers of vegetables, food grains, fruit trees, economic crops, and forage and green manure crops collected in this action accounted for 33.57%, 25.91%, 24.35%, 14.59%, and 1.57% respectively, and they belong to 83 families, 229 genera, and 313 species. Among these gerplasm resources, 16.04% belong to the Leguminosae faminly with the highest persentage. Different regions and altitudes were relevant to the species types and quantities of crop germplasm resources collected. Among the 9 prefecture level cities in the province, Sanming city had the highest number of germplasm resources, accounting for 20.65%. The number of crop germplasm resources decreased along with the increase of altitude. The number of collections at different altitude was correlated with the number of counties (cities, districts), townships(towns), and villages(streets). The Shannon-Wiener diversity index and Brillouin richness index were the highest at an altitude of 0-200 meters in the six prefecture level cities (Zhangzhou, Fuzhou, Ningde, Quanzhou, Putian, Xiamen) in coastal areas, while these two indexes are relatively high at the altitudes of 200-400 meters, 400-600 meters, and 600-800 meters in three mountainous areas, such as Longyan, Sanming, and Nanping, respectively. Through the correlation analyses of species diversity index in different prefecture level cities and altitude intervals, a highly significant positive correlation was detected between the Shannon-Wiener diversity index and Sanming and Longyan cities, while a highly significant negative correlation was detected between the Pielou evenness index and Putian and Longyan cities, which might be closely correlated to the agricultural economic zones in the province. Thus, by investigating the diversity of crop germplasm resources in Fujian province, this study provided reference and scientific basis for the development, utilization, and excavation of local crop germplasm resources to meet local demands.
  • Review
    LIU Bo,WU Yinyu,WANG Min,FAN Shaoqiang,CAO Yaping
    Dasypyrum villosum (L.) Candargy is one of wild relatives of common wheat (Triticum aestivum L.). It is also the genetic resources for wheat improvement and has been widely used in recent years. In the long-term evolution process, D. villosum evolved many important agronomic traits, such as resistance to abiotic and biotic stresses, excellent quality, which are useful in wheat genetic improvement. This review paper briefly describes the homologous relationship between D. villosum and T. aestivum, the hybridization affinity with Triticum, and the effective methods for introgressing D. villosum chromosome disease,chromosome segments and genes into T. aestivum. The resistance genes of D. villosum to powdery mildew disease, sheath blight disease, stripe rust disease, eye spot disease, yellow mosaic disease, take-all disease, and cyst nematode disease on chromosome, the quality genes (such as : high lysine content and polymorphic storage protein, etc.), the drought tolerance, photoperiod and other genes were also reviewed. The application and great value of powdery mildew resistance genes of Pm21 and PmV in wheat improvement and breeding were introduced. The future research prospects and possible problems on D. villosum research were prospected.This review might provide reference for exploring and utilizing the beneficial genes of D. villosum, to broaden wheat genetic resources, accelerate the breeding process and functional investigation of important genes.
  • Research Articles
    GUO Xinmiao,YUAN Yingchun,HU Guanxing,JIANG Yi,LI Nanxin,GONG Wenfang
    The study aimed to analyze the degree of variation, heterosis and genetic tendency of floral traits in hybrid progenies of Camellia oleifera. 322 hybrid progenies and their parents (DY2×HS) were analyzed at eight characters, including flower transverse diameter, flower longitudinal diameter, petal number, anthers number, style dehiscence number, stamens group length, style length and pistils length, followed by the genetic variation analysis, test of normality and probability grading, heterosis analysis and cluster analysis. The results showed that: (1) The coefficient of variation ranged from 11.74% to 22.10%, with an average of 16.26%. (2) The normal distribution was observed at the flower transverse diameter, flower longitudinal diameter, anthers number and stamens group length, the bi-modal distribution was detected at the number of petals and style length, and the skewness distribution was detected at style dehiscence number and pistils length. The class III showed highest proportion of frequency distribution with an average of 43.05%, while grade V accounted for the lowest proportion, with an average of 8.07%. (3) The mid-parent heterosis of floral organs ranged from –28.48% to 5.65%, the ultra-high parent heterosis ranged from –49.29% to –9.12%, and the ultra-low parent heterosis ranged from –18.06% to 29.12%. Except for the ultra-high parent heterosis was all negative which suggested a certain degree of heterosis decline, the other two indicators showed a trend of positive and negative bidirectional distribution, among which the style dehiscence number and anthers number were positive in the mid-parent heterosis and the ultra-low parent heterosis, and the advantages were obvious and stable; the style length and the pistils length are positive in the ultra-low parent heterosis. The results of relative heritability showed that the male parent was superior than the female parent in number of anthers and style dehiscence, and the progenies had a paternal tendency. For the remaining 6 quantitative traits, female parent was more dominant and the progenies had a maternal characteristics. (4) The test materials were divided into three groups by cluster analysis, among which the group II had the best comprehensive performance and heterosis utilization value. These results demonstrate that hybrid progeny populations have a high degree of genetic variation and the heterosis of significance, which can provide a reference basis for enriching the comprehensive evaluation system of C. oleifera and screening of excellent individuals early.
  • Research Articles
    XUE Xiaofang,ZHAO Ailing,JIAO Wenli,WANG Yongkang,REN Haiyan,SHI Meijuan,SU Wanlong,LI Yi,LIU Li,LI Dengke
    Sugars and acids are important components that contribute to the flavor of fruit. To identify the sugar-acid flavor indexes and analyze the compositional difference in sugar-acid flavor among jujube varieties, as well as establish the evaluation system for sugar-acid flavor are of great significance. By taking use of 210 jujube varieties, here we measured and analyzed the contents of soluble solids, titrable acids, and sugar components in fruit at the crisp ripening stage. The results were as follows: (1) The coefficient of variation ranged from 9.81% - 34.70% for the 10 indexes, including soluble solids, sweetness value, and total sugar that show smaller coefficient. The range of sucrose content varied the most, with the maximum being 84.54 times that of the minimum. Except soluble solid and sweet-acid ratio,eight indexes, including fructose, glucose, sucrose, total sugar, titrable acid, sweetness value, solid-acid ratio and sugar-acid ratio, were observed with the normal distribution. (2) The fructose, glucose and sucrose significantly positively correlated with total sugar content. A significant positive correlation between fructose and glucose content, as well as the significant positive correlation among total sugar, soluble solid and sweet value were observed. Titrable acid significantly negatively correlated with solid-acid ratio, sugar-acid ratio and sweet-acid ratio. The significant correlations among the solid-acid ratio, sugar-acid ratio and sweet-acid ratio were observed. (3) Factor analysis extracted three main factors with a cumulative contribution rate of 91.781%. Combined with the cluster analysis of various indexes, five indexes, including fructose, sucrose, soluble solid, titrable acid and solid-acid ratio, were selected to evaluate the sugar-acid flavor of jujube fruit. (4) Based on the five evaluation indexes, cluster analysis suggested five groups in 210 jujube varieties. These groups were defined as low sucrose type, high acid type, fructose dominant type, intermediate type and sucrose dominant type, where the sucrose dominant type contained the largest number of varieties. Collectively, the evaluation of sugar-acid flavor in jujube fruit can be performed using the five indexes, and the application of jujube varieties by considering the sugar and acid indexes could be desirable in production.
  • Research Articles
    LIANG Shuqing,ZHOU Xiaohui,YANG Yan,ZHANG Jingxian,LIU Songyu,LIU Jun,ZHUANG Yong
    Whirly is a class of plant specific transcription factors that can bind to single-stranded DNA molecules and play a wide and complex role in both nucleus and organelles. In order to explore the functional and evolutionary relationships of Whirly genes in eggplant, we applied the bioinformatics approach to identify Whirly genes, including the phylogenetic relationships, gene structure, conservative motifs and cis-acting elements in promoters. Their transcriptional profiles were also analyzed in different tissues, or under treatments of exogenous hormone, low temperature and pathogen infection. The results showed that the Whirly gene family of eggplant contained two members, named SmWHY1 and SmWHY2, which were closely related to the Whirly genes in tomato. Both SmWHY1 and SmWHY2 expressed in different tissues, and the transcripts of SmWHY1 in leaves were higher than that of SmWHY2 in other tissues. The induction at two genes was detected under treatments (abscisic acid, methyl jasmonate, salicylic acid, low temperture and pathogen), whereas the responses were variable in gene and/or by treatments. In G114, a Phytophthora capsici resistant germplasm, two genes showed relatively high expression. Collectively, these results indicated that SmWHY1 and SmWHY2 may play an important role in the regulation of growth, development, and response to stress.
  • Research Articles
    OUYANG Chenlin,ZHAO Zhichao,XING Xinxin,LIU Bojuan,ZHANG Haitao,CHENG Zhijun
    Panicle apical abortion is often observed in rice production, which impairs the number of grains per panicle, the seed setting rate and the yield of single plant, and should be avoided in breeding practice. The dense and erect panicle is a plant type adaptable to dense planting. It is of importance to isolate the genes related to these two traits in molecular design breeding. Here, we present the research result of a rice panicle mutant zhao1, which displays the dense panicle and panicle apical abortion. Either dense panicle or panicle apical abortion was segregated independently in the F2 population derived from zhao1 crossed with IRAT129. Genetic analysis showed that the dense and erect panicle trait is controlled by a single dominant gene, while the panicle apical abortion trait may involve no more than two pairs of genes. Based on the linkage analysis and map-based cloning at both traits respectively, the gene DEP1 was found to be the candidate for the dense panicle trait in zhao1 which carries the identity mutation as the dep1. The linkage mapping and map-based cloning to the trait of panicle apical abortion finally delimited the candidate gene to the physical interval of 6.85-6.93 Mb on chromosome 3, where 8 putative genes are annotated. The gene LOC_Os03g12790 was observed with the most significant decrease on transcriptional profile, and served as the best candidate for the panicle apical abortion phenotype. Collectively, our results laid the foundation for the future cloning of the functional gene in rice.