Genetic Improvement and Genomics-Assisted Breeding of the Germplasm Resource Thinopyrum intermedium

JIANG Bo,ZHANG Shu-xin,WANG Hui,SHI Yue,LI zi-qi,ZHU lei,SONG Wei-fu,YANG Xue-feng,SONG Qing-jie,LI Xin-ling and ZHANG Yan-ming

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Journal of Plant Genetic Resources ›› 2020, Vol. 21 ›› Issue (6) : 1385-1394. DOI: 10.13430/j.cnki.jpgr.20200531002
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Genetic Improvement and Genomics-Assisted Breeding of the Germplasm Resource Thinopyrum intermedium

  • JIANG Bo1, ZHANG Shu-xin1, WANG Hui1, SHI Yue1, LI zi-qi1, ZHU lei1, SONG Wei-fu2, YANG Xue-feng2, SONG Qing-jie2, LI Xin-ling1, ZHANG Yan-ming1
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Abstract

Thinopyrum intermedium, which is a perennial wheatgrass of Gramineae, is a wild relative species of common wheat. It generally develops stronger roots and shoots, larger spike and many flowers, and often represents good characters on biotic and abiotic stresses as well as higher protein content in the grains. Th. intermedium, as a target in breeding for perennial crops, has exhibited great potential in uses for grain and forage. In this paper, the achievements of direct domestication, distant hybridization with other crops, genomics-assisted breeding in Th. intermedium have been reviewed, and the future research focus and the breeding strategy have been prospected. This study can provide scientific basis for the improvement and utilization of Th. intermedium wild germplasm resources.

Key words

Thinopyrum intermedium;domestication;wild hybridization;genome

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JIANG Bo,ZHANG Shu-xin,WANG Hui,SHI Yue,LI zi-qi,ZHU lei,SONG Wei-fu,YANG Xue-feng,SONG Qing-jie,LI Xin-ling and ZHANG Yan-ming. Genetic Improvement and Genomics-Assisted Breeding of the Germplasm Resource Thinopyrum intermedium. Journal of Plant Genetic Resources. 2020, 21(6): 1385-1394 https://doi.org/10.13430/j.cnki.jpgr.20200531002

References

Huang J P, Zhang G L, Zhang Y P, Guan X D, Wei Y and Guo R X. Global Desertification Vulnerability to Climate Change and Human Activities. Land Degradation and Development, 2020, https://doi.org/10.1002/ldr.3556
Glover J D, Reganold J P, Bell L W, Borevitz J, Brummer E C, Buckler E S, Cox C M, Cox T S, Crews T E, Culman S W, DeHaan L R, Eriksson D, Gill B S, Holland J, Hu F, Hulke B S, Ibrahim A M H, Jackson W, Jones S S, Murray S C, Paterson A H, Ploschuk E, Sacks E J, Snapp S, Tao D, Van Tassel D L, Wade L J, Wyse D L, Xu Y. Increased Food and Ecosystem Security via Perennial Grains. Science, 2010, 328 (5986): 1638-1639
Godfray H C J, Beddington J R, Crute I R, Haddad L, Lawrence D, Muir J F, Pretty J, Robinson S, Thomas S M, Toulmin C. Food security: The Challenge of Feeding 9 Billion People. Science, 2010, 327 (5967): 812-818
Springmann M, Clark M, Mason-D’Croz D, Wiebe K, Bodirsky B L, Lassaletta L, Vries W D, Vermeulen S J, Herrero M, Carlson K M, Jonell M, Troell M, DeClerck F, Gordon L J, Zurayk R, Scarborough P, Rayner M, Loken B, Fanzo J, Godfray H C J, Tilman D, Rockstr?m J and Willett W. Options for Keeping the Food System Within Environmental Limits. Nature, 2018, 562 (7728): 519-525
Monfreda C, Ramankutty N, Foley J A. Farming the Planet: 2. Geographic Distribution of Crop Areas, Yields, Physiological Types, and Net Primary Production in the Year 2000. Global Biogeochem Cycles, 2008, 22 (1): 1-19
DeHaan L R. Perennial Crops Are a Key to Sustainably Productive Agriculture. In book: Food Security: Production and Sustainability, United States: Institute on Science for Global Policy, 2017: 23-27
Crews T E, Cattani D J. Strategies, Advances, and Challenges in Breeding Perennial Grain Crops. Sustainability, 2018, 10 (7): 2192
Kantar M B, Tyl C E, Dorn K M, Zhang X F, Jungers J M, Kaser J M, Schendel R R, Eckberg J O, Runck B C, Bunzel M, Jordan N R, Stupar R M, Marks M D, Anderson J A, Johnson G A, Sheaffer C C, Schoenfuss T C, Ismail B, Heimpel G E, Wyse D L. Perennial Grain and Oilseed Crops. Annual Review of Plant Biology, 2016, 67: 703-729
Ryan M R, Crews T E, Culman S W, DeHaan L R, Hayes R C, Jungers J M, Bakker M G. Managing for Multifunctionality in Perennial Grain Crops. BioScience, 2018, 68 (4): 294-304
Cox T S, Glover J D, Van Tassel D L, Cox C M, Dehaan L R. Prospects for Developing Perennial Grain Crops. BioScience, 2006, 56 (8): 649-659
Wang R R C, Lu B. Biosystematics and Evolutionary Relationships of Perennial Triticeae Species Revealed by Genomic Analyses. Journal of Systematics and Evolution, 2014, 52 (6): 697-705
Wang R R C, Jensen K B, Bushman B S, DeHaan L R, Wang S, Yan X B. Genome Evolution of Intermediate Wheatgrass as Revealed by EST-SSR Markers Developed from Its Three Progenitor Diploid Species. Genome, 2015, 58 (2): 63-70
李振声, 容珊, 钟冠昌, 陈漱阳, 穆素梅. 小麦远缘杂交. 北京: 科学出版社, 1985: 52-58
Li Z S, Rong S, Zhong G C, Chen S Y, Mu S M. Wheat Wild Hybridization. Beijing: Science Press, 1985: 52-58
Cui L, Ren Y K, Murray T D, Yan W, Guo Guo, Niu Y, Sun Y, Li H J. Development of Perennial Wheat Through Hybridization Between Wheat and Wheatgrasses: A Review. Engineering, 2018, 4 (4): 507-513
刘淑娟, 张晓军, 李欣, 刘成, 白建荣, 任永康, 郑军, 李世姣, 郭慧娟, 梅超, 张树伟, 畅志坚, 乔麟轶. 中间偃麦草第6同源群特异STS标记开发.草业学报, 2019, 28 (4): 139-145
Liu S J, Zhang X J, Li X, Liu C, Bai J R, Ren Y K, Zheng J, Li S J, Guo H J, Mei C, Zhang S W, Chang Z J, Qiao L Y. Development of Specific STS Markers for the Sixth Homologous Group of Thinopyrum Intermedium. Acta Prataculturae Sinica, 2019, 28 (4): 139-145
李集临, 曲敏, 张延明. 小麦染色体工程. 北京: 科学出版社, 2011: 50-60
Li J L, Qu M, Zhang Y M. Wheat Chromosome Engineering. Beijing: Science Press, 2011: 50-60
Schulz-Schaeffer J, Haller S E. Registration of Montana-2 Perennial ×Agrotriticum intermediodurum Khizhnyak. Crop Science, 1987, 27 (4)
王洪刚, 刘树兵, 亓增军, 孔凡晶, 高居荣. 中间偃麦草在小麦遗传改良中的应用研究. 山东农业大学学报:自然科学版, 2000, 31 (3): 333-336
Wang H G, Liu S B, Qi Z J, Kong F J, Gao J R. Application Studies of Elytrigia Intermedium in Hereditary Improvement of Wheat. Journal of Shandong Agricultural University: Natural Science, 2000, 31 (3): 333-336
Cox T S, Van Tassel D L, Cox C M, Dehaan L R. Progress in Breeding Perennial Grains. Crop Pasture Science, 2010, 61: 513–521
DeHaan L R, Ismail B P. Perennial Cereals Provide Ecosystem Benefits. Cereal Foods World, 2017, 62: 278–281
Wagoner P. Intermediate wheatgrass (Thinopyrum intermedium). Development of a Perennial Grain Crop. cereals pseudocereals, 1995
Harmoney K R. Cool-Season Grass Biomass in the Southern Mixed-Grass Prairie Region of the USA. Bioenergy Research, 2015, 8 (1): 203-210
Becker R, Wagoner P, Hanners G D, Saunders R M. Compossitional, Nutritional and Functional Evaluation of Intermediate Wheatgrass (Thinopyrum intermedium). Journal of Food Processing and Preservation, 1991, 15 (1): 63-77
Marti A, Qiu X, Schoenfuss T C, Seetharaman K. Characteristics of Perennial Wheatgrass (Thinopyrum intermedium) and Refined Wheat Flour Blends: Impact on Rheological Properties. Cereal Chemistry, 2015, 92 (5): 434-440
Marti A, Bock J E, Pagani M A, Ismail B, Seetharaman K. Structural Characterization of Proteins in Wheat Flour Doughs Enriched with Intermediate Wheatgrass (Thinopyrum Intermedium) Flour. Food Chemistry, 2016, 194: 994-1002
Zhang X F, Dehaan L R, Higgins L A, Markowski T W, Wyse D L, Anderson J A. New Insights into High-Molecular-Weight Glutenin Subunits and Sub-Genomes of the Perennial Crop Thinopyrum Intermedium (Triticeae). Journal of Cereal Science, 2014, 59 (2): 203-210
Zhang X F, Jae-Bom O, Haring S, DeHaan L R, Anderson J A. Towards the Understanding of End-Use Quality in Intermediate Wheatgrass (Thinopyrum intermedium): High-Molecular-Weight Glutenin Subunits, Protein Polymerization, and Mixing Characteristics. Journal of Cereal Science, 2015, 66: 81-88
Cox T S, Bender M, Picone C, Van Tassel D L, Holland J B, Brummer E C, Zoeller B E, Paterson A H Jackson W. Breeding Perennial Grain Crops. Critical Reviews in Plant Sciences, 2002, 21 (2): 59-91
马三梅, 王永飞. 植物驯化、传统育种和基因工程育种. 世界农业, 2005, (6):47-48
Ma S M, Wang Y F. Plant Domestication, Traditional Breeding and Genetic Engineering Breeding. World Agriculture, 2005, (6): 47-48
DeHaan L R, Van Tassel D L, Anderson J A, Asselin S R, Barnes R, Baute G J, Cattani D J, Culman S W, Dorn K M, Hulke B S, Kantar M, Larson S, Marks M D, Miller A J, Poland J, Ravetta D A, Rude E, Ryan M R, Wyse D, and Zhang X F. A Pipeline Strategy for Grain Crop Domestication. Crop Science, 2016, 56: 917-930
Wagoner P. Perennial Grain: New Use for Intermediate Wheatgrass. journal of soil water conservation, 1990, 45 (1): 81-82
Wagoner P, van der Grinten M, Drinkwater L E. Breeding Intermediate Wheatgrass (Thinopyrum Intermedium) for Use as a Perennial Grain. Agron Abstr, 1996: 93
DeHaan L R, Wang S W, Larson S R, Cattani D J, Zhang X F, Kantarski T. Current Efforts to Develop Perennial Wheat and Domesticate Thinopyrum Intermedium as a Perennial Grain.// Batello C, Wade L, Cox S, Pogna N, Bozzini A, Choptiany J. Perennial Crops for Food Security. Rome, Italy: FAO, 2013: 72-89
DeHaan L, Christians M, Crain J, Poland J. Development and Evolution of an Intermediate Wheatgrass Domestication Program. Sustainability, 2018, 10: 1499
Crain J, Bajgain P, Anderson J, Zhang X F, DeHaan L and Poland J. Enhancing Crop Domestication Through Genomic Selection, a Case Study of Intermediate Wheatgrass. Frontiers inSPlantSScience, 2020, 11: 319
Zhang X F, Sallam A, Gao L L, Kantarski T, Poland J, DeHaan L R, Wyse D L, Anderson J A. Establishment and Optimization of Genomic Selection to Accelerate the Domestication and Improvement of Intermediate Wheatgrass. The Plant Genome, 2016, 9 (1): 1-18
Bajgain P, Zhang X F, Anderson J A. Genome-Wide Association Study of Yield Component Traits in Intermediate Wheatgrass and Implications in Genomic Selection and Breeding. G3: GENES, GENOMES, GENETICS, 2019, 9 (8): 2429-2439
Cattani D J. Selection of a Perennial Grain for Seed Productivity Across Years: Intermediate Wheatgrass as a Test Species. Canadian Journal of Plant ence, 2016: CJPS-2016-0280.R1
Cattani D J, Asselin S R. Has Selection for Grain Yield Altered Intermediate Wheatgrass?. Sustainability, 2018, 10 (3): 688
Culman S W, Snapp S S, Ollenburger M, Basso B, DeHaan L R. Soil and Water Quality Rapidly Responds to the Perennial Grain Kernza Wheatgrass. Agronomy, Soils Environmental Quality, 2013, 105 (3): 735-744
Jungers J M, Dehaan L R, Betts K J, Sheaffer C C, Wyse D L. Intermediate Wheatgrass Grain and Forage Yield Responses to Nitrogen Fertilization. AgronoMy, soils enVironMental Quality, 2017, 109 (2): 1-11
DeHaan L, Larson S, López-Marqués R L, Wenkel S, Gao C X and Palmgren M. Roadmap for Accelerated Domestication of an Emerging Perennial Grain Crop. Trends in Plant Science, 2020, 25 (6): 525-537
李集临,孙善澄.普通小麦与天蓝偃麦草杂交中间型遗传的研究. 遗传学报, 1980, 7 (2):158-164
Li J L, Sun S C. Study on the Intermediate Genetic Hybrid of Wheat and Agropyron Glaucum. Acta Genetica Sinica, 1980, 7 (2): 157-165
孙善澄. 小偃麦新品种与中间类型的选育途径、程序和方法. 作物学报, 1981, 7 (1): 51-58
Sun S C. TrititrigiaNew Breeding Way of Germplasm and Intermediate Types, Procedures and Methods. Acta Agronomica Sinica, 1981, 7 (1): 51-58
牟金叶, 李集临, 王献平, 景建康, 张相岐. 异源细胞质小麦-中间偃麦草易位系的培育与荧光原位杂交鉴定. 科学通报, 2000, 45 (3): 297-300
Mou J Y, Li J L, Wang X P, Jing J K, Zhang X Q. Heterologous Cytoplasmic Wheat-Agropyron Intermediate Incubated with a Fluorescent Intermediate in situ Hybridization to Identify Translocation Line. Chinese Science Bulletin, 2000, 45(3): 297-300
亓晓蕾, 鲍印广, 李兴锋, 钱兆国, 王瑞霞, 吴科, 王洪刚. 十个八倍体小偃麦的细胞学鉴定和染色体构成分析. 作物学报, 2017, 43 (7): 967-973
Qi X L, Bao Y G, Li X F, Qian Z G, Wang R X, Wu K, Wang H G. Cytological Identification and Chromosome Constitution Analyses of Ten Octoploid Trititrigia Accessions. Acta Agronomica Sinica, 2017, 43 (7): 967-973
祁适雨, 于世远, 张耀辉, 于光华, 宋凤英. 春小麦与天兰冰草远缘杂交育种的研究. 中国农业科学, 1979 (2): 1-11
Qi S Y, Yu S Y, Zhang Y H, Yu G H, Song F Y. Research of Spring Wheat and Agropyron glaucum Wild Hybridization Breeding. Scientia Agricultura Sinica, 1979 (2): 1-11
钟冠昌, 穆素梅, 张正斌. 麦类远缘杂交. 北京: 科学出版社, 2002, 70-98
Zhong G C, Mu S M, Zhang Z B. Wheat Wild Hybridization. Beijing: Science Press, 2002, 70-98
闫小丹, 张延明, 李集临. 八倍体小偃麦与天蓝偃麦草杂交F1染色体组构型. 植物研究, 2010, 30 (2): 197-201
Yan X D, Zhang Y M, Li J L. Elytrigia Genome Structure of Hybrid Octoploid Trititrigia and Agropyron Glaucum. Bulletin of Botanical Research, 2010, 30 (2): 197-201
孙玉, 孙善澄, 刘少翔, 闫贵云, 郭庆. 多年生小麦的培育与选择研究. 种子, 2011, (04): 25-30
Sun Y, Sun S C, Liu S X, Yan G Y, Guo Q. Study on Varieties Breeding and Selection of Perennial Wheat. Seed, 2011, (04): 25-30
赵海滨, 张延明, 史春龙, 闫小丹, 田超, 厉永鹏, 李集临. 寒地多年生小麦的选育与细胞遗传学分析. 作物学报, 2012, 38(08): 1378-1386
Zhao H B, Zhang Y M, Shi C L, Yan X D, Tian C, Li Y P, Li J L. Development and Cytogenetic Analysis of Perennial W heat in Cold Region. Acta Agronomica Sinica, 2012, 38 (08): 1378-1386
靳嵩, 周璇, 李政宏, 李集临, 张延明. 多年生小麦杂种F5代分子细胞遗传学鉴定. 生物技术通报, 2014, (3): 65-72
Jin S, Zhou X, Li Z H, Li J L, Zhang Y M. Molecular Cytogenetic Identification of Perennial Wheat Hybrid at the Fifth Generation. Biotechnology Bulletin, 2014, (3): 65-72
Yan W, Jin X, Jiang B, Qi X Y, Chen Y X, Li X L, Liu X Q, Ren Y K, Cui L, Song Q J, Li H J, Friebe B, Li J L and Zhang Y M. Development and Molecular Cytogenetic Characterization of Cold-Hardy Perennial Wheatgrass Adapted to Northeastern China. Frontiers in Plant Science, 2020, 11: 582
Tester M, Langridge P. Breeding Technologies to Increase Crop Production in a Changing World. Science, 2010, 327: 818-822
Talukder S K, Saha M C. Toward Genomics-Based Breeding in C3 Cool-Season Perennial Grasses. Frontiers in Plant Science, 2017, 8: 1317
Kantarski T, Larson S, Zhang X F, DeHaan L, Borevitz J, Anderson J Poland J. Development of the First Consensus Genetic Map of Intermediate Wheatgrass (Thinopyrum Intermedium) Using Genotyping-By-Sequencing. Theoretical and Applied Genetics, 2017, 130: 137-150
Zhang X F, Larson S R, Gao L L, Teh S L, DeHaan L R, Fraser M, Sallam A, Kantarski T, Frels K, Poland J, Wyse D, Anderson J A. Uncovering the Genetic Architecture of Seed Weight and Size in Intermediate Wheatgrass through Linkage and Association Mapping. The Plant Genome, 2017, 10 (3): 1-15
Larson S, DeHaan J, Poland J, Zhang X F, Dorn K, Kantarski T, Anderson J, Schmutz J, Grimwood J, Jenkins J, Shu S Q, Robbins M Jensen K. Genome Mapping ofSQuantitative Trait Loci (QTL) Controlling Domestication Traits ofSIntermediate Wheatgrass (Thinopyrum Intermedium). Theoretical and Applied Genetics, 2019, 132: 2325-2351
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