基于RAPD和EST-SSR标记的秀珍菇菌株聚类分析

忻雅, 阮松林, 王世恒, 马华升, 王伟科, 王淑珍,

食用菌学报. 2008, 15(04): 24-29

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食用菌学报 ›› 2008, Vol. 15 ›› Issue (04) : 24-29. DOI: 10.16488/j.cnki.1005-9873.2008.04.007
目次

基于RAPD和EST-SSR标记的秀珍菇菌株聚类分析

  • 忻雅,阮松林,王世恒,马华升,王伟科,王淑珍,
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Cluster Analysis of Ten Pleurotus geesteranus Strains Based on Random Amplification of Polymorphic DNA (RAPD) and Expressed Sequence Tag- Single Sequence Repeats (EST-SSR) Markers

  • XIN Ya RUAN Songlin WANG Shiheng MA Huasheng WANG Weike WANG Shuzhen(Hangzhou Academy of Agricultural Sciences,Hangzhou,Zhejiang 310024,China)
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摘要

本研究利用RAPD标记和EST-SSR标记对10个不同来源的秀珍菇菌株进行聚类分析。200条RAPD引物中127条有扩增产物。引物可用率为63.5%。从NCBI数据库中下载秀珍菇及相近侧耳属食用菌EST序列2167条,聚类比对后得到全长为713.541 kb的非冗余EST 1442条,搜寻后得到的29个EST-SSR全部设计引物,其中26对引物(89.7%)显示多态性。根据17条RAPD核心引物和10对EST-SSR核心引物的扩增结果,对10个秀珍菇菌株进行了RAPD标记、EST-SSR标记及二者相结合的聚类分析。3种分析结果相近,且与菌丝、子实体生长特性分析结果相统一—10个供试菌株区分为5组:1~4号菌株为一组,6号和7号菌株为一组,8号和9号菌株为一组,5号和10号菌株各自为一组。

Abstract

Amplification products were obtained from ten strains of Pleurotus geesteranus using 127 (63.5%) of 200 RAPD primers tested.A total of 2167 Expressed Sequence Tags (ESTs) from P.geesteranus and related Pleurotus species were downloaded from the NCBI database and,after clustering,1442 non- redundant ESTs with a total length of approximately 713,541 bp were obtained.Twenty-nine Expressed Sequence Tag- Single Sequence Repeats (EST-SSRs) were selected from these non-redundant ESTs and used to design EST-SSR primers.All 29 primer pairs were used for PCR amplification of genomic DNA extracted from the mycelia of ten P.geesteranus strains,and amplification products generated using 26 primer pairs (89.7%) exhibited polymorphisms.A dendrogram based on UPGMA (unweighted pair group method with arithmetic average) cluster analysis using combined data obtained using 17 RAPD core primers and 10 EST- SSR core primer pairs revealed that the 10 strains were clustered into five groups.

关键词

秀珍菇,RAPD标记,EST-SSR标记,聚类分析

Key words

Pleurotus geesteranus,,RAPD marker,,EST-SSR marker,,cluster analysis

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忻雅, 阮松林, 王世恒, 马华升, 王伟科, 王淑珍,. 基于RAPD和EST-SSR标记的秀珍菇菌株聚类分析. 食用菌学报. 2008, 15(04): 24-29 https://doi.org/10.16488/j.cnki.1005-9873.2008.04.007
XIN Ya RUAN Songlin WANG Shiheng MA Huasheng WANG Weike WANG Shuzhen(Hangzhou Academy of Agricultural Sciences, Hangzhou, Zhejiang , China). Cluster Analysis of Ten Pleurotus geesteranus Strains Based on Random Amplification of Polymorphic DNA (RAPD) and Expressed Sequence Tag- Single Sequence Repeats (EST-SSR) Markers. Acta Edulis Fungi. 2008, 15(04): 24-29 https://doi.org/10.16488/j.cnki.1005-9873.2008.04.007
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